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Table 3 Correlation between real-time RT-PCR and DNA microarray data

From: Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles

Gene symbol Gene name Mouse Human GenBank # r p KM
amh anti-müllerian hormone Amh AMH BX65284    13
     tcav0004c.11 0.903 ***  
star steroidogenic acute regulatory protein Star STAR A047032    13
     tcad0007a.07 0.546 ***  
     tcad0008a.24 0.603 ***  
dmrt1 doublesex- and mab-3-related transcription factor 1 Dmrt1 DMRT1 AF209095    9
     tcad0009a.11 0.813 ***  
nr5a1b nuclear receptor subfamily 5, group A, member 1 b Nr5a1 NR5A1 AY879314    11
     tcad0006a.10 0.439 ***  
apoeb apolipoprotein E b Apoe APOE     
     AJ132620    6
     tcac0005c.15 0.634 ***  
     tcad0007a.20 0.695 ***  
bzrp benzodiazepine receptor, peripheral Bzrp BZRP AY029216    9
     tcab0001c.16 0.181 NS  
bmp7 bone morphogenetic protein 7 Bmp7 BMP7 BX301016    3
     tcav0001c.14 0.557 ***  
gdf9 growth differentiation factor 9 Gdf9 GDF9 BX79301    3
     tcad0007a.06 0.660 ***  
inha inhibin alpha Inha INHA AB044566    6
     tcav0001c.05 0.885 ***  
     tcav0005c.12 0.907 ***  
     tcac0005c.12 0.780 ***  
     tcad0005a.05 0.805 ***  
gcl germ cell-less homolog (Drosophila) Gcl GCL BX081118    8
     tcad0009a.22 0.417 ***  
vldr very low density lipoprotein receptor Vldr VLDR AJ003117    3
     tcad0005a.13 0.823 ***  
hsp90b heat shock protein 90 beta Hspcb HSPCB BX072707    2
     tcac0006c.15 0.628 ***  
gapdh glyceraldehyde-3-phosphate dehydrogenase Gapdh GAPDH AF027130    1
     tcab0001c.21 0.427 ***  
     tcac0004c.07 0.463 ***  
     tcac0006c.01 0.436 ***  
     tcad0002a.13 0.314 *  
tfa transferrin Trf TF D89083    10
     tcad0003a.22 0.053 NS  
aldob aldolase b, fructose-bisphosphate Aldob ALDOB BX081681    3
     tcad0001a.21 0.790 ***  
m agoh mago-nashi homolog, proliferation-associated Magoh MAGOH BX080533    4
     tcab0001c.07 0.812 ***  
timp2 tissue inhibitor of metalloproteinase 2 Timp2 TIMP2 CA360907    9
     tcac0004c.16 0.082 NS  
     tcad0001a.20 0.167 NS  
     tcad0005a.08 0.031 NS  
     tcad0006a.16 0.013 NS  
     tcad0007a.18 0.060 NS  
tra2a transform er-2 alpha Tra2a TRA2A BX074515    5
     tcad0008a.18 0.366 **  
  1. Each gene is depicted by its gene symbol and gene name (according to the zebrafish nomenclature). Symbols for mouse and human homolog genes are also given with their corresponding GenBank accession number. K-means cluster number (KM) is given for each gene with the correlation coefficient r to compare correlation between expression profiles measured by real-time RT-PCR (GenBank # in bold) and microarrays (clone numbers). Significant correlations were determined using the Pearson's correlation coefficient test (**: p < 0.01; ***: p < 0.05; NS: Not Significant).