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Table 3 Correlation between real-time RT-PCR and DNA microarray data

From: Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles

Gene symbol

Gene name

Mouse

Human

GenBank #

r

p

KM

amh

anti-müllerian hormone

Amh

AMH

BX65284

  

13

    

tcav0004c.11

0.903

***

 

star

steroidogenic acute regulatory protein

Star

STAR

A047032

  

13

    

tcad0007a.07

0.546

***

 
    

tcad0008a.24

0.603

***

 

dmrt1

doublesex- and mab-3-related transcription factor 1

Dmrt1

DMRT1

AF209095

  

9

    

tcad0009a.11

0.813

***

 

nr5a1b

nuclear receptor subfamily 5, group A, member 1 b

Nr5a1

NR5A1

AY879314

  

11

    

tcad0006a.10

0.439

***

 

apoeb

apolipoprotein E b

Apoe

APOE

    
    

AJ132620

  

6

    

tcac0005c.15

0.634

***

 
    

tcad0007a.20

0.695

***

 

bzrp

benzodiazepine receptor, peripheral

Bzrp

BZRP

AY029216

  

9

    

tcab0001c.16

0.181

NS

 

bmp7

bone morphogenetic protein 7

Bmp7

BMP7

BX301016

  

3

    

tcav0001c.14

0.557

***

 

gdf9

growth differentiation factor 9

Gdf9

GDF9

BX79301

  

3

    

tcad0007a.06

0.660

***

 

inha

inhibin alpha

Inha

INHA

AB044566

  

6

    

tcav0001c.05

0.885

***

 
    

tcav0005c.12

0.907

***

 
    

tcac0005c.12

0.780

***

 
    

tcad0005a.05

0.805

***

 

gcl

germ cell-less homolog (Drosophila)

Gcl

GCL

BX081118

  

8

    

tcad0009a.22

0.417

***

 

vldr

very low density lipoprotein receptor

Vldr

VLDR

AJ003117

  

3

    

tcad0005a.13

0.823

***

 

hsp90b

heat shock protein 90 beta

Hspcb

HSPCB

BX072707

  

2

    

tcac0006c.15

0.628

***

 

gapdh

glyceraldehyde-3-phosphate dehydrogenase

Gapdh

GAPDH

AF027130

  

1

    

tcab0001c.21

0.427

***

 
    

tcac0004c.07

0.463

***

 
    

tcac0006c.01

0.436

***

 
    

tcad0002a.13

0.314

*

 

tfa

transferrin

Trf

TF

D89083

  

10

    

tcad0003a.22

0.053

NS

 

aldob

aldolase b, fructose-bisphosphate

Aldob

ALDOB

BX081681

  

3

    

tcad0001a.21

0.790

***

 

m agoh

mago-nashi homolog, proliferation-associated

Magoh

MAGOH

BX080533

  

4

    

tcab0001c.07

0.812

***

 

timp2

tissue inhibitor of metalloproteinase 2

Timp2

TIMP2

CA360907

  

9

    

tcac0004c.16

0.082

NS

 
    

tcad0001a.20

0.167

NS

 
    

tcad0005a.08

0.031

NS

 
    

tcad0006a.16

0.013

NS

 
    

tcad0007a.18

0.060

NS

 

tra2a

transform er-2 alpha

Tra2a

TRA2A

BX074515

  

5

    

tcad0008a.18

0.366

**

 
  1. Each gene is depicted by its gene symbol and gene name (according to the zebrafish nomenclature). Symbols for mouse and human homolog genes are also given with their corresponding GenBank accession number. K-means cluster number (KM) is given for each gene with the correlation coefficient r to compare correlation between expression profiles measured by real-time RT-PCR (GenBank # in bold) and microarrays (clone numbers). Significant correlations were determined using the Pearson's correlation coefficient test (**: p < 0.01; ***: p < 0.05; NS: Not Significant).