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Table 3 Representative chimerization sites found in M. grisea

From: Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription

Element IDa

RNA templateb

Upstream sequencec

Downstream sequenced

34

MGL

CGCAGC

A TTCG

24

MGL

TATGCT

A TATT

23

MGL

AGCGCC

T CCGG

4

MGL

GGGGTC

T TAGA

15

MGL

GGGGTC

T TAGA

14

MGL

TGGGCC

T TTCT

13

MGL

GGAGCC

C GAGG

12

MGL

GGAGCC

C GAGG

9

MGL

TTGGCC

A TGAG

8

MGL

TTGGCC

A TGAG

6

MGL

ATAGCC

A CCAA

5

MGL

ATAGCC

A CCAA

2

MGL

ACTGCC

T TTTC

1

MGL

GCCGTC

A GACG

7

MGL

CAAGCT

T CGGG

16

MGL

TGGGCC

G CTTT

32

MgSINE

GCCGTC

A GACG

33

MgSINE

CCCGCC

T GTGC

Consensus sequence

All types

---GCC

A/T----

  1. aSee Additional file 1 for the detailed description of each chimeric element.
  2. bType of the template RNA molecule.
  3. cUpstream nucleotide sequence, relatively to the template switching site.
  4. dDownstream nucleotide sequence, relatively to the template switching site.