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Table 2 Brachyury-like (Primitive Streak) gene list (Pearson correlation >0.9 with brachyury)

From: Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture

Description Symbol Corr. Synonyms Genbank ID Expression/Function
Brachyury (T) T 1.00 cou;Low;Lr;;T1 NM_009309.1 [33, 136] Primitive streak
Eomesodermin * Eomes 0.98 Tbr2 NM_010136.1 [33] Primitive streak
Fibroblast growth factor 8 Fgf8 0.97 Aigf;Fgf-8 NM_010205.1 [137] primitive streak expression
Mix1 Mixl1 0.97 Mm1;Mml NM_013729.2 [30] KO primitive streak abnormal
Lysophospholipase isoform 1 A530050D06Rik 0.97   XM_203596  
LIM homeobox protein 1 * Lhx1 0.96 Lim1; Lhx1 NM_008498 [31] Primitive streak expression
Mesoderm posterior 1 Mesp1 0.95   NM_008588.1 [138] nascent mesodermal cells
Sp5 Sp5 0.94   NM_022435.2 [32] Primitive streak expression
8430415E04Rik * 8430415E04Rik 0.94 unknown NM_028980.1  
Axin2 Axin2 0.94 Axi1;Axil;Conductin NM_015732.3 [139] Wnt signalling inhibitor
Ninein Nin 0.93 mKIAA1565 NM_008697 [140] Centrosome anchoring
E330009J07Rik E330009J07Rik 0.93 mKIAA1147 NM_175528  
Proteosome subunit, beta 8 * Psmb8 0.93 Lmp-7;Lmp7 NM_010724.1 [141] reduced MHC class I
Solute carrier family 30 member 3 Slc30a3 0.93 Znt3 NM_011773 [142] KO no phenotype
DHHC-type Zn-finger containing protein 2400007G07Rik 0.92   AK010296  
Chemokine (C-C motif) ligand 20 Ccl20 0.92   NM_016960 [143] T and B cell regulation
Protease 28 subunit, beta * Psme2b 0.92 PA28b-p;Psme2-like NM_011191.1 [144] MHC Class I regulation
D130029J02Rik D130029J02Rik 0.92   XM_150103  
F-box and leucine-rich repeat protein 14 Fbxl14 0.92 Fbx14l NM_133940  
WD repeat & FYVE domain containing 1 Wdfy1 0.92 FENS-1;Jr1;WDF1 NM_027057 [145] Endosome and Golgi regulation
ADP-ribosylation factor-like 6 int. protein 2 Arl6ip2 0.92 Aip-2;AV334690 NM_019717.1  
Protease 28 subunit, alpha Psme1 0.92 PA28a NM_011189.1 [146] Proteasome activator MHC Class I
TAF10 Taf10 0.92 30 kDa;Taf2h;TAFII30 NM_020024.3 [147] KO ICM phenotype
Helicase with zinc finger domain Helz 0.91   NM_198298 [148] Primitive streak expression
Transmembrane 4 superfamily member 10 Tm4sf10 0.91 BCMP1 NM_175771.2  
1190004M23Rik 1190004M23Rik 0.90    
Carbonic anhydrase 14 Car14 0.90   NM_011797.1 [149] KO no phenotype
Male enhanced antigen 1 Mea1 0.90 Mea-1 NM_010787.1 [150] Testis development
Delta-like 3, transcript variant 1 Dll3 0.90 pu;pudgy NM_007866.1 [151] primitive streak expression
Ring finger protein 30 Rnf30 0.90 MURF;MURF-3 NM_021447.1 [152] Myogenic regulator
  1. * More than one independent illumina probe for these genes were identified