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Table 3 Genes differentially expressed during ES cell differentiation in serum versus serum-free defined media (BMP4 2 ng/ml)

From: Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture

Set 1 – Chemokine ligands (Day 8)

Symbol

Synonyms

Genbank ID

BMP4

Serum

Hydroxyprostaglandin dehydrogenase 15

Hpgd

 

NM_008278.1

2.22

4.4

Src-like adaptor

Sla

Slap

NM_009192

1.29

.90

Pleckstrin

Plek

 

NM_019549.1

1.31

4.9

Triggering receptor expressed on myeloid cells-like 1

Treml1

 

XM_128641.3

1.67

12.6

Glycoprotein 5 (platelet)

Gp5

GPV

NM_008148.2

1.52

8.9

2810484G07Rik

   

2.07

13.5

Chemokine (C-X-C motif) ligand 7

Cxcl7

b-TG1; CTAP3; LDGF; MDGF;NAP-2

NM_023785.1

1.07

4.8

Angiotensin receptor 1

Agtr1

AT1;AT1a;AT2R1

NM_177322.2

1.58

5.8

Arachidonate 12-lipoxygenase

Alox12

Alox12p;P-12LO

NM_007440.2

1.29

9.2

Chemokine (C-C motif) ligand 4

Ccl4

Act-2; MIP-1B

NM_013652

1.81

19.5

Chemokine (C-X-C motif) ligand 4

Cxcl4

Pf4;Scyb4

NM_019932.1

3.85

29.0

ATPase, Ca2+ transporting, ubiquitous

Atp2a3

Serca3

NM_016745.2

1.30

6.1

Chemokine (C-C motif) ligand 3

Ccl3

Mip1a;Scya3

NM_011337.1

1.75

11.8

Set 2 – Globins (Day 6)

Symbol

Synonyms

Genbank ID

BMP4

Serum

β-major globin

Hbb-b1

 

AK002258

2.15

21.7

ζ-globin

Hba-x

 

NM_010405.2

4.30

128.3

ε-y globin

Hbb-y

E-y

NM_008221.2

1.80

38.1

Nuclear factor erythroid-2 (p45)

Nfe2

p45NFE2

NM_008685.2

1.32

10.4

α-globin

Hba-a1

Hba1

NM_008218.1

3.21

89.7

Band-3/anion exchanger 1

Slc4a1

Ae1;CD233;Band 3

NM_011403.1

1.19

26.2

Rik2510042H12

  

AK011092

1.01

4.1

Aminolevulinic acid synthase 2

Alas2

Alas-2

NM_009653.1

1.14

13.2

β h1-globin

Hbb-bh1

betaH1

NM_008219.2

3.65

61.2

Set 3 – Blood (Day 8)

Symbol

Synonyms

Genbank ID

BMP4

Serum

Alpha hemoglobin stabilising protein

AHSP

AHSP;EDRF

NM_133245.1

1.7

3.4

Myeloperoxidase

Mpo

 

NM_010824

1.1

3.6

 

Slc38a5

SN2; JM24

NM_172479.1

1.3

2.5

Glycophorin A

Gypa

CD235a;GPA

NM_010369.2

2.1

5.2

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4

Cited4

Mrg2

NM_019563

1.3

2.5

Mitoferrin

Mscp

Slc25a37

NM_030054.2

1.5

2.4

Kruppel-like factor 1

Klf1

Eklf

NM_010635

1.8

3.6

Set 4 – Various (Day 16)

Symbol

Synonyms

Genbank ID

BMP4

Serum

FXYD domain-containing ion transport regulator 2

Fxyd2

Atp1g1

NM_007503

1.38

6.7

Thioether S-methyltransferase

Temt

 

NM_009349

0.97

6.0

Mus musculus FXYD domain-containing ion transport regulator 2, transcript variant a

Fxyd2

Atp1g1

NM_052824.1

1.16

5.7

Fibrinogen, alpha

Fga

Fib

NM_010196.1

2.06

11.8

Kininogen-1

Kng1

 

NM_023125.2

6.25

37.3

Serum amyloid A 3

Saa3

Saa-3

NM_011315

1.04

4.5

Deleted in azoospermia-like

Dazl

Dazla;Tpx-2;Tpx2

NM_010021.2

0.91

3.8

Fibrinogen, alpha

Fga

Fib

NM_010196.1

2.57

14.3

Chitinase 3-like 1

Chi3l1

brp-39;Brp39;Gp39

NM_007695.1

1.75

7.3

Kininogen II

  

NM_201375.1

1.73

7.9

Set 5 – Macrophage (Day 16)

Symbol

Synonyms

Genbank ID

BMP4

Serum

Neutrophil cytosolic factor 2

Ncf2

Ncf-2; p67phox

NM_010877

2.05

3.56

Complement component 1q beta

C1qb

 

NM_009777.1

1.13

4.63

Matrix metalloproteinase 12

Mmp12

Mmel

NM_008605.1

3.17

8.53

Complement component 3

C3

ASP;Plp

NM_009778.1

2.17

10.46

CD68 antigen

Cd68

gp110;Scard1

NM_009853

1.84

5.58

Macrophage expressed gene 1

Mpeg1

 

XM_129176

3.08

6.74

TYRO protein tyrosine kinase binding protein

Tyrobp

DAP12;KARAP;Ly83

NM_011662.2

2.80

4.81

Myosin IF

Myo1f

 

NM_053214.1

1.64

3.33

Hematopoietic protein 1

Hemp1

 

NM_153505.2

1.41

4.22

Glutathione S-transferase, alpha 3

Gsta3

Gst2-3

NM_010356.2

1.73

8.67

Glycoprotein (transmembrane) nmb

Gpnmb

Dchil;ipd

NM_053110

1.55

6.63

Pleckstrin homology, Sec7 and coiled/coil domains 4

Pscd4

2510004M07Rik

NM_028195

1.54

3.83

B-cell leukaemia/lymphoma-2 related protein A1b

Bcl2a1b

A1-b

NM_007534

2.49

6.35

Complement component 1q, gamma

C1qg

C1qc

NM_007574.1

1.26

5.27

Fc receptor, IgG, low affinity III

Fcgr3

CD16

NM_010188.2

2.10

5.84

Lysozyme

Lyzs

Lys;Lzm;;Lzp

NM_017372.2

5.80

21.72

Chemokine (C-C motif) ligand 9

Ccl9

CCF18;MRP-2;

NM_011338

2.26

3.85

B-cell leukemia 2 related protein A1d

Bcl2a1d

A1-d

NM_007536

2.51

4.49

EGF-like module containing, mucin-like, hormone receptor-like 1

Emr1

F4/80; Ly71;TM7LN3

NM_010130.1

1.54

3.44

Set 6 – Day 16

Symobol

Synonyms

Genebank ID

BMP4

Serum

Insulin-like growth factor 1

Igf1

C730016P09Rik;Igf-1;Igf-I

NM_010512.2

1.6

4.8

 

Prss35

 

NM_178738.1

4.7

5.9

Protein tyrosine phosphatase, non-receptor type substrate 1

Ptpns1

CD172a; SHP-1;SHPS-1;

XM_149178.1

2.2

3.7

Apolipoprotein A-II

Apoa2

Alp-2;Apoa-2;ApoA-II;Hdl-1

NM_013474.1

9.8

57.4

Spondin 2, extracellular matrix protein

Spon2

;M-spondin;Mindin

NM_133903.2

2.0

12.0

Set 7 – Stem and late Day 16

Symbol

Synonyms

Genbank ID

BMP4

Serum

Fbox 15

Fbxo15

  

0.96

4.4

Aurora kinase C

Aurkc

AIE1;AIK3;Stk13

NM_020572.1

0.94

4.1

2200001I15Rik

  

NM_183278.1

0.94

6.4

Hypothetical protein LOC236546

 

AF067061

NM_199060.1

0.85

3.8

Eukaryotic translation initiation factor 1A

LOC195150

 

XM_111306.1

0.80

9.3

Similar to Pro-Pol-dUTPase polyprotein; RNaseH

LOC386244

 

XM_359136.1

0.88

5.2

Similar to hypothetical protein FLJ35105

LOC245109

 

XM_142517.3

0.89

3.7

Down regulated in renal cell carcinoma

Drr1

TU3A

AK044219

0.57

9.3

Set 8 – Cardiac Day 16

Symbol

Synonyms

Genbank ID

BMP4

Serum

ATPase, Ca++ transporting, cardiac muscle, fast twitch 1

Atp2a1

SERCA1

NM_007504.2

6.9

1.1

Cholinergic receptor, nicotinic, gamma

Chrng

Achr-3;Acrg

NM_009604.2

4.5

1.0

Myosin, light polypeptide 1

  

BC059087.1

8.0

1.1

Alpha actin, skeletal muscle

Acta1

Acta-2;Acts;Actsk-1

NM_009606.1

25.3

1.2

Tropomyosin 2 beta

Tpm2

Tpm-2;Trop-2

NM_009416.2

11.6

1.3

Cholinergic receptor, nicotinic, alpha

Chrna1

Achr-1;Acra

NM_007389.2

4.1

1.0

Troponin C2, fast

Tnnc2

Tncs

NM_009394.2

5.7

0.9

Neurofilament 3, medium

Nef3

NF-M;NF160;Nfm

NM_008691.1

4.5

1.1

Myosin heavy chain

Myh8

 

XM_354617

6.7

1.1

Cholinergic receptor, nicotinic, alpha 1

Chrna1

Achr-1;Acra

NM_007389.2

5.4

1.1

Set 9 – Cardiac 2 Day 6

Symbol

Synonyms

Genbank ID

BMP4

Serum

a-Actin, cardiac

Actc1

Actc-1

NM_009608.1

31.2

3.6

Somatostatin

Sst

Smst;SOM;SRIF;SS

NM_009215.1

10.8

2.2

Myosin, light polypeptide 7, regulatory

Myl7

MLC2a;MYL2A;;RLC-A

NM_022879.1

14.3

4.7

Myosin, heavy polypeptide 7, cardiac muscle, beta

Myh7

Myhc-b;Myhcb

NM_080728.1

8.2

2.4

a-Actin, cardiac

Actc1

Actc-1

NM_009608.1

26.3

3.5

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BMC Genomics

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