Table 1 Gene ontology assignment using different cutoffs
Category | TIGR E < 1 × 10-27 | PartiGene E < 1 × 10-25 | PartiGene E < 1 × 10-8 | ||
|---|---|---|---|---|---|
Total annotated | TCs - | TCs 2615 | singletons 730 | TCs 3608 | singletons 1096 |
Molecular function | 1369 | 2297 | 644 | 3147 | 971 |
Catalytic activity | 745 | 1190 | 332 | 1503 | 470 |
Binding | 702 | 1191 | 329 | 1649 | 517 |
Molecular function unknown | 252 | 49 | 7 | 72 | 12 |
Transport activity | 216 | 160 | 0 | 216 | 74 |
Structural molecule activity | 174 | 117 | 0 | 154 | 28 |
Transcription regulator activity | 111 | 27 | 10 | 45 | 14 |
Signal transducer activity | 89 | 79 | 25 | 130 | 37 |
Enzyme regulator activity | 72 | 65 | 14 | 97 | 28 |
Antioxidant activity | 21 | 4 | 0 | 6 | 0 |
Motor Activity | 14 | 8 | 0 | 11 | 0 |
Biological process | 1321 | 1804 | 508 | 2373 | 736 |
Physiological process | 1212 | 1044 | 274 | 1326 | 394 |
Cellular process | 645 | 17 | 4 | 24 | 10 |
Nucleic acid metabolism | 438 | 412 | 130 | 577 | 195 |
Development | 409 | 90 | 31 | 128 | 44 |
Regulation of biological process | 357 | 7 | 0 | 11 | 1 |
Biological process unknown | 220 | 11 | 4 | 23 | 6 |
Behavior | 77 | 2 | 0 | 5 | 1 |
Cellular component | 1253 | 1231 | 356 | 1700 | 539 |
Intracellular | 1204 | 938 | 245 | 1218 | 365 |
Cell | 1164 | 388 | 124 | 566 | 196 |
Cellular component unknown | 291 | 9 | 5 | 20 | 7 |
Extracellular | 90 | 66 | 9 | 107 | 15 |
Unlocalized | 15 | 9 | 5 | 9 | 6 |