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Table 4 Comparison of the location of partition genes and the putative ML origin for each of the 28 secondary circular chromosomes

From: Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

Bacterial Species

Accession

parA/repA 1

POML2

Distance3

Brucella abortus

NC_006933

0.998

0.999

0.001

Brucella melitensis, 16M

NC_003318

0.079

0.079

0.000

Brucella melitensis, Abortus 2308

NC_007624

0.998

0.999

0.001

Brucella suis

NC_004311

0.998

0.999

0.001

Burkholderia sp. 383, Chr 2

NC_007511

0.002

0.000

0.002

Burkholderia sp. 383, Chr 3

NC_007509

0.996

0.001

0.005

Burkholderia cenocepacia, Chr 2

NC_008061

0.879

0.878

0.001

Burkholderia cenocepacia, Chr 3

NC_008062

0.315

0.320

0.005

Burkholderia mallei

NC_006349

0.997

0.001

0.004

Burkholderia pseudomallei, 1710b

NC_007435

0.576

0.578

0.002

Burkholderia pseudomallei, K96243

NC_006351

0.998

0.001

0.003

Burkholderia thailandensis

NC_007650

0.998

0.000

0.002

Burkholderia xenovorans, Chr 2

NC_007952

0.000

0.006

0.006

Burkholderia xenovorans, Chr 3

NC_007953

0.981

0.979

0.002

Photobacterium profundum

NC_006371

0.999

0.000

0.001

Ralstonia eutropha

NC_007348

0.775

0.778

0.003

Ralstonia metallidurans

NC_007974

0.943

0.946

0.003

Ralstonia solanacearum

NC_003296

0.001

0.002

0.001

Rhodobacter sphaeroides

NC_007494

0.996

0.513

0.483

Silicibacter sp. TM1040

NC_008043

0.517

0.519

0.002

Silicibacter pomeroyi

NC_006569

0.678

0.668

0.010

S. meliloti, pSymA

NC_003037

0.999

0.991

0.008

S. meliloti, pSymB

NC_003078

0.034

0.060

0.026

Vibrio cholerae

NC_002506

0.999

0.005

0.006

Vibrio fischeri

NC_006841

0.999

0.002

0.003

Vibrio parahaemolyticus

NC_004605

0.999

0.000

0.001

Vibrio vulnificus CMCP6

NC_004460

0.689

0.692

0.003

Vibrio vulnificus, YJ016

NC_005140

0.999

0.002

0.003

  1. 1parA or repA location (see text), as a fraction of chromosome length starting at the NCBI site 1.
  2. 2POML as inferred from rRNA sites or σGC > 0 (see text).
  3. 3Distance between parA/repA location and POML.