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Table 4 Comparison of the location of partition genes and the putative ML origin for each of the 28 secondary circular chromosomes

From: Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

Bacterial Species Accession parA/repA 1 POML2 Distance3
Brucella abortus NC_006933 0.998 0.999 0.001
Brucella melitensis, 16M NC_003318 0.079 0.079 0.000
Brucella melitensis, Abortus 2308 NC_007624 0.998 0.999 0.001
Brucella suis NC_004311 0.998 0.999 0.001
Burkholderia sp. 383, Chr 2 NC_007511 0.002 0.000 0.002
Burkholderia sp. 383, Chr 3 NC_007509 0.996 0.001 0.005
Burkholderia cenocepacia, Chr 2 NC_008061 0.879 0.878 0.001
Burkholderia cenocepacia, Chr 3 NC_008062 0.315 0.320 0.005
Burkholderia mallei NC_006349 0.997 0.001 0.004
Burkholderia pseudomallei, 1710b NC_007435 0.576 0.578 0.002
Burkholderia pseudomallei, K96243 NC_006351 0.998 0.001 0.003
Burkholderia thailandensis NC_007650 0.998 0.000 0.002
Burkholderia xenovorans, Chr 2 NC_007952 0.000 0.006 0.006
Burkholderia xenovorans, Chr 3 NC_007953 0.981 0.979 0.002
Photobacterium profundum NC_006371 0.999 0.000 0.001
Ralstonia eutropha NC_007348 0.775 0.778 0.003
Ralstonia metallidurans NC_007974 0.943 0.946 0.003
Ralstonia solanacearum NC_003296 0.001 0.002 0.001
Rhodobacter sphaeroides NC_007494 0.996 0.513 0.483
Silicibacter sp. TM1040 NC_008043 0.517 0.519 0.002
Silicibacter pomeroyi NC_006569 0.678 0.668 0.010
S. meliloti, pSymA NC_003037 0.999 0.991 0.008
S. meliloti, pSymB NC_003078 0.034 0.060 0.026
Vibrio cholerae NC_002506 0.999 0.005 0.006
Vibrio fischeri NC_006841 0.999 0.002 0.003
Vibrio parahaemolyticus NC_004605 0.999 0.000 0.001
Vibrio vulnificus CMCP6 NC_004460 0.689 0.692 0.003
Vibrio vulnificus, YJ016 NC_005140 0.999 0.002 0.003
  1. 1parA or repA location (see text), as a fraction of chromosome length starting at the NCBI site 1.
  2. 2POML as inferred from rRNA sites or σGC > 0 (see text).
  3. 3Distance between parA/repA location and POML.