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Table 8 Model parameters for the E. coli K12 chromosome when the MO method is implemented

From: Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

Site Class1 CA+T2 πAT σAT πGC σGC
IG 0.578 [0.576,0.579] 0.0012 [-0.001,0.003] - 0.0053 [-0.007,-0.003] 0.0015 [-0.0004,0.003] 0.0180 [0.016,0.020]
C1+ 0.411 [0.410,0.413] 0.0944 [0.093,0.096] - 0.0023 [-0.003,0.0002] 0.104 [0.102,0.106] 0.0072 [0.007,0.010]
C1- 0.409 [0.408,0.410] - 0.0954 [-0.097,-0.094] - 0.0010 [-0.003,0.0004] - 0.107 [-0.108,-0.105] 0.0109 [0.0092,0.013]
C2+ 0.593 [0.592,0.594] - 0.0168 [-0.018,-0.015] 0.0079 [0.0059,0.010] - 0.0461 [-0.048,-0.045] 0.0045 [0.003,0.006]
C2- 0.594 [0.593,0.595] 0.0133 [0.011,0.015] - 0.0019 [-0.004,0.001] 0.0449 [0.043,0.046] 0.0038 [0.002,0.005]
C3+ 0.442 [0.441,0.444] - 0.0782 [-0.080,-0.077] - 0.0056 [-0.008,-0.005] 0.0219 [0.0193,0.0234] 0.0249 [0.022,0.026]
C3- 0.439 [0.438,0.441] 0.0813 [0.080,0.082] - 0.0064 [-0.008,-0.005] - 0.0198 [-0.021,-0.018] 0.0241 [0.022,0.026]
D4+ 0.381 [0.378,0.383] -0.0548 [-0.058,-0.052] -0.0079 [-0.010,-0.005] 0.0228 [0.020,0.026] 0.0464 [0.043,0.049]
D4- 0.380 [0.387,0.382] 0.0619 [0.059,0.064] -0.0079 [-0.010,-0.005] -0.0243 [-0.027,-0.021] 0.0421 [0.039,0.046]
  1. 1Sites are classified as intergenic (IG) or coding (C) with the latter further classified by codon position, as indicated by the subscript, and chromosome strand, as indicated by the superscript. D4 are four fold degenerate C3 sites.
  2. 2The ML value is given with the 95% interval given in brackets.