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Table 1 Search for homologs of Prochlorococcus MED4 Yfr1 within the genome sequences of four different cyanobacterial model species based on sequence similarity

From: A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria

Species

Match

Score (bits)

E value

Location

Synechocystis PCC 6803

30.2

0.13

overlapping the start codon of slr1277 gspD in antisense orientation

 

30.2

0.13

intergenic spacer sll0185_slr0199

 

28.2

0.50

ssl3769- trxA intergenic spacer

Anabaena PCC 7120

32.2

0.058

mRNA, cobalt transport protein

 

28.2

0.91

mRNA, hypothetical protein

 

28.2

0.91

Intergenic spacer

Synechococcus PCC 630 1

26.3

1.4

antisense orientation to mRNA of syc1906_d "hypothetical protein"

 

26.3

1.4

mRNA,ftsY

 

24.3

5.4

mRNA, hisC

Synechococcus WH 7803

24.3

4.8

mRNA, Ferredoxin-dependent glutamate synthase

 

24.3

4.8

mRNA, NAD/NADP transhydrogenase subunit alpha part 1

 

22.3

19

mRNA, glycosyltransferase of family GT4

  1. The three top hits (S, subject sequence; Q, query sequence) obtained by BlastN are given for each genome.