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Table 1 Search for homologs of Prochlorococcus MED4 Yfr1 within the genome sequences of four different cyanobacterial model species based on sequence similarity

From: A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria

Species Match Score (bits) E value Location
Synechocystis PCC 6803 30.2 0.13 overlapping the start codon of slr1277 gspD in antisense orientation
  30.2 0.13 intergenic spacer sll0185_slr0199
  28.2 0.50 ssl3769- trxA intergenic spacer
Anabaena PCC 7120 32.2 0.058 mRNA, cobalt transport protein
  28.2 0.91 mRNA, hypothetical protein
  28.2 0.91 Intergenic spacer
Synechococcus PCC 630 1 26.3 1.4 antisense orientation to mRNA of syc1906_d "hypothetical protein"
  26.3 1.4 mRNA,ftsY
  24.3 5.4 mRNA, hisC
Synechococcus WH 7803 24.3 4.8 mRNA, Ferredoxin-dependent glutamate synthase
  24.3 4.8 mRNA, NAD/NADP transhydrogenase subunit alpha part 1
  22.3 19 mRNA, glycosyltransferase of family GT4
  1. The three top hits (S, subject sequence; Q, query sequence) obtained by BlastN are given for each genome.