Table 4 Motifs found matching transcription factor PWMs from TRANSFAC

acns even

DME280

ATAAACAN

Forkhead DNA-binding domain

Vertebrate

FOXI1a,FOXF1,FOXL1,FOXO4

DME424

WGTAAAYA

Forkhead DNA-binding domain

Vertebrate

FOXC1,FOXA4a,HNF-3beta

DME768

WTGTCATV

Basic region + leucine zipper (bZIP)

Nematode

Skn-1

DME1427

WGTCATSM

Basic region + leucine zipper (bZIP)

Nematode

Skn-1

acns odd

DME27

VATTWGCA

POU

Vertebrate

POU2F1

DME349

ATAAACAN

Forkhead DNA-binding domain

Vertebrate

FOXI1a,FOXF1,FOXL1,FOXO4

DME1014

GTMAACAD

Forkhead DNA-binding domain

Vertebrate

FOXD1,HNF-3beta,FOXO1a

DME1700

CCAATMAB

DNA-binding domain with Histone fold

Fungal

HAP2,HAP3,HAP4

promoters even

promoters odd

DME1268

STGASTYA

Basic region + leucine zipper (bZIP)

Vertebrate

NF-E2,AP-1

random even

DME90

VCAGATGN

Basic region + helix-loop-helix motif

Vertebrate

ITF-2,Tal-1beta

DME94

CATCTGBN

Basic region + helix-loop-helix motif

Vertebrate

ITF-2,Tal-1beta,E47

DME765

RTGWSTCA

Basic region + leucine zipper (bZIP)

Vertebrate

NF-E2,AP-1,Fos,Jun,Fra

DME1106

TGTTBACW

Forkhead DNA-binding domain

Vertebrate

HNF-3beta

DME1111

ATAAACAH

Forkhead DNA-binding domain

Vertebrate

FOXI1a,FOXF1,FOXL1,FOXO4

DME1920

CCACGTGG

Basic region + helix-loop-helix motif

Plant, Vertebrate

PIF3,c-Myc:Max

random odd

DME11

CAGCTGNN

Basic region + helix-loop-helix motif

Vertebrate

AP-4

DME456

MAYAAACA

Forkhead DNA-binding domain

Vertebrate

FOXF1

DME790

TATGVAAA

POU

Vertebrate

POU2F1

DME930

ATAAAYAT

Forkhead DNA-binding domain

Vertebrate, Insect

FOXI1a,Croc

DME1145

TGTTBACW

Forkhead DNA-binding domain

Vertebrate

HNF-3beta