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Table 4 Motifs found matching transcription factor PWMs from TRANSFAC

From: Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

Accession Consensus/ID Factor class Taxon Binding factors
acns even     
DME280 ATAAACAN Forkhead DNA-binding domain Vertebrate FOXI1a,FOXF1,FOXL1,FOXO4
DME424 WGTAAAYA Forkhead DNA-binding domain Vertebrate FOXC1,FOXA4a,HNF-3beta
DME768 WTGTCATV Basic region + leucine zipper (bZIP) Nematode Skn-1
DME1427 WGTCATSM Basic region + leucine zipper (bZIP) Nematode Skn-1
acns odd     
DME27 VATTWGCA POU Vertebrate POU2F1
DME349 ATAAACAN Forkhead DNA-binding domain Vertebrate FOXI1a,FOXF1,FOXL1,FOXO4
DME1014 GTMAACAD Forkhead DNA-binding domain Vertebrate FOXD1,HNF-3beta,FOXO1a
DME1700 CCAATMAB DNA-binding domain with Histone fold Fungal HAP2,HAP3,HAP4
promoters even    
promoters odd    
DME1268 STGASTYA Basic region + leucine zipper (bZIP) Vertebrate NF-E2,AP-1
random even     
DME90 VCAGATGN Basic region + helix-loop-helix motif Vertebrate ITF-2,Tal-1beta
DME94 CATCTGBN Basic region + helix-loop-helix motif Vertebrate ITF-2,Tal-1beta,E47
DME765 RTGWSTCA Basic region + leucine zipper (bZIP) Vertebrate NF-E2,AP-1,Fos,Jun,Fra
DME1106 TGTTBACW Forkhead DNA-binding domain Vertebrate HNF-3beta
DME1111 ATAAACAH Forkhead DNA-binding domain Vertebrate FOXI1a,FOXF1,FOXL1,FOXO4
DME1920 CCACGTGG Basic region + helix-loop-helix motif Plant, Vertebrate PIF3,c-Myc:Max
random odd     
DME11 CAGCTGNN Basic region + helix-loop-helix motif Vertebrate AP-4
DME456 MAYAAACA Forkhead DNA-binding domain Vertebrate FOXF1
DME790 TATGVAAA POU Vertebrate POU2F1
DME930 ATAAAYAT Forkhead DNA-binding domain Vertebrate, Insect FOXI1a,Croc
DME1145 TGTTBACW Forkhead DNA-binding domain Vertebrate HNF-3beta