Table 3 List of transcripts that predominate the oil palm TUCs
| Â | Â | Â | Â | Â | Â | Number of EST in each cDNA library | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Contig ID | Putative identity | No of ESTs | Species | Accession number | E-value | Root | Shoot apical meristem | Young flower | Mature flower | Suspension cell culture | Zygotic embryo |
Contig1765 | Metallothionein-like protein | 145 | Typha latifolia | gb|AAK28022.1 | 1E-60 | 50 | 8 | 35 | 39 | 13 | 0 |
Contig962 | Glycine-rich RNA binding protein 2 | 59 | Pelargonium × hortorum | gb|AAB63581.1 | 8E-36 | 6 | 8 | 22 | 20 | 1 | 2 |
Contig1185 | Putative translation initiation factor eIF-1A-like | 57 | Solanum tuberosum | gb|ABB55392.1 | 8E-51 | 21 | 3 | 16 | 17 | 0 | 0 |
Contig1589 | Alpha-tubulin | 49 | Prunus dulcis | emb|CAA47635.1 | 0.0 | 5 | 6 | 9 | 28 | 1 | 0 |
Contig447 | Cyclophilin | 43 | Ricinus communis | emb|CAC80550.1 | 6E-77 | 16 | 5 | 11 | 7 | 2 | 2 |
Contig1818 | Type 2 metallothionein-like protein | 43 | Typha angustifolia | gb|ABQ14530.1 | 2E-10 | 41 | 0 | 0 | 0 | 2 | 0 |
Contig1809 | Putative translation elongation factor eEF-1 beta' chain | 42 | Oryza sativa | dbj|BAC22427.2 | 3E-63 | 7 | 1 | 10 | 24 | 0 | 0 |
Contig1384 | Translationally controlled tumor protein | 42 | Elaeis guineensis | gb|AAQ87663.1 | 7E-88 | 9 | 7 | 14 | 9 | 0 | 3 |
Contig165 | Putative OsCTTP | 41 | Oryza sativa | dbj|BAD19560.1 | 5E-84 | 17 | 0 | 21 | 3 | 0 | 0 |
Contig1595 | Type 2 metallothionein-like protein | 41 | Typha latifolia | gb|AAK28022.1 | 8E-11 | 2 | 6 | 12 | 21 | 0 | 0 |
Contig2050 | hypothetical protein OsI_022576 | 37 | Oryza sativa | gb|EAZ01344.1 | 4E-45 | 17 | 1 | 4 | 15 | 0 | 0 |
Contig1214 | PVR3-like protein | 36 | Ananas comosus | gb|AAM28295.1 | 2E-17 | 14 | 9 | 3 | 10 | 0 | 0 |
Contig268 | DnaJ-like protein | 35 | Oryza sativa | dbj|BAD25681.1 | 3E-177 | 4 | 14 | 9 | 5 | 3 | 0 |
Contig614 | Early-methionine-labelled polypeptide | 32 | Elaeis guineensis | gb|ABD66069.1 | 1E-43 | 0 | 0 | 0 | 0 | 0 | 32 |
Contig2086 | Cationic peroxidase 2 | 30 | Glycine max | gb|AAC83463.1 | 1.E-155 | 3 | 0 | 5 | 10 | 12 | 0 |
Contig80 | Glyceraldehyde 3-phosphate dehydrogenase | 29 | Magnolia quinquepeta | emb|CAA42905.1 | 2E-1744 | 2 | 5 | 4 | 4 | 12 | 2 |
Contig1135 | Hypothetical protein CBG17156 | 29 | Caenorhabditis briggsae | emb|CAE70527.1 | 0.22 | 9 | 14 | 0 | 0 | 5 | 1 |
Contig449 | T6D22.2 | 27 | Arabidopsis thaliana | gb|AAF79822.1 | 0.0 | 2 | 9 | 10 | 6 | 0 | 0 |
Contig584 | Myo-inositol-1-phosphate synthase | 26 | Nicotiana tabacum | dbj|BAA95788.1 | 0.0 | 0 | 3 | 12 | 11 | 0 | 0 |
Contig1454 | Alpha-tubulin | 26 | Prunus dulcis | emb|CAA47635.1 | 0.0 | 7 | 8 | 4 | 6 | 1 | 0 |