Table 5 Differentially expressed genes with the top hits (R values) in multiple cDNA libraries of oil palm
| Â | Â | Â | Â | Number of EST in each cDNA library | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Contig ID | Description | E-value | Organism | Root | Shoot apical Meristem | Young Flower | Mature Flower | Suspension cell culture | Zygotic embryo | R value |
Contig165 | Putative OsCTTP | 2.93E-84 | ref|XP_507481.1Oryza sativa | 17 | 0 | 21 | 3 | 0 | 0 | 0 |
Contig1512 | Hypothetical protein XP_524016 | 1.00E-170 | ref|XP_524016Pan troglodytes | 0 | 0 | 0 | 20 | 1 | 0 | 0 |
Contig584 | Myo-inositol-1-phosphate synthase | 1.00E-170 | dbj|BAA95788.1Nicotiana tabacum | 0 | 3 | 12 | 11 | 0 | 0 | 0 |
Contig1589 | Alpha-tubulin | 1.00E-11 | emb|CAA47635.1Prunus dulcis | 5 | 6 | 9 | 28 | 1 | 0 | 0 |
Contig1595 | Type 2 metallothionein-like protein | 1.00E-07 | gb|ABQ14530.1Typha angustifolia | 2 | 6 | 12 | 21 | 0 | 0 | 0 |
Contig504 | Acidic class III chitinase OsChib3a | 1.00E-94 | NP_917360.1Oryza sativa | 0 | 0 | 0 | 0 | 13 | 0 | 0 |
Contig874 | 1-Aminocyclopropane-1-carboxylic acid oxidase | 1.00E-168 | gb|AAP13098.1Elaeis guineensis | 0 | 0 | 0 | 0 | 9 | 0 | 0 |
Contig1135 | Hypothetical protein | 0.130103 | emb|CAE70527.1Caenorhabditis briggsae | 9 | 14 | 0 | 0 | 5 | 1 | 0 |
Contig1435 | rRNA intron-encoded homing endonuclease | 1.00E-08 | ref|XP_525925.1Pan troglodytes | 0 | 14 | 1 | 1 | 0 | 0 | 0 |
Contig1809 | Translation elongation factor eEF-1 beta' chain | 1.00E-65 | ref|XP_506540.1Oryza sativa | 7 | 1 | 10 | 24 | 0 | 0 | 0 |
Contig1818 | Type 2 metallothionein-like protein | 1.00E-10 | gb|AAL09705.1Typha latifolia | 41 | 0 | 0 | 0 | 2 | 0 | 0 |
Contig614 | Early-methionine-labelled polypeptide | 1.00E-170 | emb|CAB88095.1Secale cereale | 0 | 0 | 0 | 0 | 0 | 32 | 0 |
Contig611 | Early-methionine-labelled polypeptide | 1.00E-36 | emb|CAB88095.1Secale cereale | 0 | 0 | 0 | 0 | 0 | 12 | 0 |
Contig634 | 7S globulin | 1.00E-25 | gb|AAK28402.1Elaeis guineensis | 0 | 0 | 0 | 0 | 0 | 21 | 0 |
Contig1007 | Dehydrin-like protein | 1.00E-26 | gb|AAF60172.1Elaeis guineensis | 0 | 0 | 0 | 0 | 2 | 10 | 0 |
Contig1024 | Embryogenesis abundant protein D-34 (LEA D-34) | 1.00E-76 | sp|P09444Gossypium hirsutum | 0 | 0 | 0 | 0 | 0 | 9 | 0 |
Contig1097 | Chaperone | 5E-26 | gb|ABF61872.1Agave tequilana | 0 | 0 | 0 | 0 | 0 | 6 | 0 |
Contig530 | Polyubiquitin | 3E-121 | gb|ABU40645.1Triticum aestivum | 2 | 0 | 0 | 0 | 10 | 0 | 0.000001 |
Contig962 | Glycine-rich RNA binding protein 2 | 1.00E-36 | gb|AAB63582.1Pelargoniu × hortorum | 6 | 8 | 22 | 20 | 1 | 2 | 0.000001 |
Contig775 | Polyphenol oxidase | 1.00E-105 | emb|CAA81798.1Vitis vinifera | 0 | 0 | 12 | 3 | 0 | 0 | 0.000002 |
Contig701 | Unknown protein | 1.00E-38 | gb|ABF59206.1Arabidopsis thaliana | 0 | 0 | 2 | 0 | 9 | 0 | 0.000002 |
Contig2113 | Putative STF-1 | 1.00E-72 | dbj|BAD31135.1Oryza sativa | 1 | 0 | 12 | 0 | 0 | 0 | 0.000002 |
Contig2086 | Cationic peroxidase 2 | 1.00E-156 | gb|AAC83463.1Glycine max | 3 | 0 | 5 | 10 | 12 | 0 | 0.000004 |
Contig546 | Non-symbiotic hemoglobin class 1 | 1.00E-67 | gb|AAP57676.1Malus × domestica | 3 | 0 | 0 | 0 | 9 | 0 | 0.000008 |
Contig553 | OSJNBa0010H02.8 | 1.00E-73 | gb|AAK84683.1Oryza sativa | 1 | 0 | 0 | 0 | 8 | 0 | 0.000015 |
Contig659 | Thaumatin-like protein 1 – apple tree | 1.00E-82 | gb|AAC36740.1Malus × domestica | 0 | 0 | 0 | 0 | 7 | 0 | 0.000016 |