From: Normalization of array-CGH data: influence of copy number imbalances

P-values for data sets | ||||||||
---|---|---|---|---|---|---|---|---|

Data set | 1 [23] | 2 [25] | 3 [20] | 4 [8] | 5 | 6 | 8 [21] | |

Nbr of samples | 7 | 28 | 10 | 52 | 8 | 8 | 8 | |

Platform | BAC 32 K | BAC 32 K | BAC 32 K | BAC 1 Mb | Agilent 244 K | Agilent 44 K | BAC 32 K | |

popLowess vs Lowess | All populations | 1.1e-4 | 7.0e-12 | 5.6e-8 | 3.4e-28 | 2.5e-05 | 1.6e-4 | 7.2e-5 |

Population 1 | 7.8e-3 | 1.4e-5 | 9.8e-4 | 9.9e-32 | 2.0e-3 | 2.0e-3 | 3.9e-3 | |

Population 2 | 7.8e-3 | 1.5e-6 | 9.8e-4 | 7.4e-4 | 2.0e-3 | 0.09 | 3.5e-2 | |

Population 3 | 0.23 | 6.3e-3 | 2.0e-2 | 2.5e-7 | 0.25 | 0.09 | 0.25 | |

popLowess vs Median | All populations | < 1e-32 | < 1e-32 | < 1e-32 | < 1e-32 | < 1e-32 | < 1e-32 | < 1e-32 |

Population 1 | 7.8e-3 | 3.7e-9 | 9.8e-4 | 9.9e-32 | 2.0e-3 | 2.0e-3 | 3.9e-3 | |

Population 2 | 6.3e-2 | 1.4e-5 | 0.17 | 3.8e-2 | 0.50 | 0.09 | 0.14 | |

Population 3 | 0.23 | 9.0e-5 | 0.25 | 0.28 | 0.25 | 0.50 | 0.75 |