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Table 3 Topological analysis network measured using different sets of reference genomes.

From: Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

Reference

Average clustering coefficient

Average connectivity

No. Co-Conserved proteins

Aerobic

0.77

5.42

1,410

All

0.81

8.22

1,700

All (inverse homology)

0.78

7.56

1,770

High GC

0.63

11.42

1,389

Low GC

0.72

67.97

1,667

Motile

0.74

16.98

1,990

Proteobacteria

0.75

23.21

2,072

Selected

0.82

5.44

1,360

  1. Pearson correlation coefficient with confidence 0.8 and E-value of 10-5 were used on binary profile vectors.
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BMC Genomics

ISSN: 1471-2164

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