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Table 3 Topological analysis network measured using different sets of reference genomes.

From: Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

Reference Average clustering coefficient Average connectivity No. Co-Conserved proteins
Aerobic 0.77 5.42 1,410
All 0.81 8.22 1,700
All (inverse homology) 0.78 7.56 1,770
High GC 0.63 11.42 1,389
Low GC 0.72 67.97 1,667
Motile 0.74 16.98 1,990
Proteobacteria 0.75 23.21 2,072
Selected 0.82 5.44 1,360
  1. Pearson correlation coefficient with confidence 0.8 and E-value of 10-5 were used on binary profile vectors.