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Table 4 Proteins existing in more than 90% and less than 10% of genomes base on different set of reference genomes. (E-value 10-5)

From: Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

Reference genome

No. proteins appearing in <10%

No. proteins appearing in > 90%

Aerobic

1,297

455

All

1,034

289

High GC Gram positive

1,912

333

Low GC Gram negative

1,899

723

Motile

745

104

Proteobacteria

614

499

Selected

1,198

446

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BMC Genomics

ISSN: 1471-2164

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