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Table 4 Proteins existing in more than 90% and less than 10% of genomes base on different set of reference genomes. (E-value 10-5)

From: Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

Reference genome No. proteins appearing in <10% No. proteins appearing in > 90%
Aerobic 1,297 455
All 1,034 289
High GC Gram positive 1,912 333
Low GC Gram negative 1,899 723
Motile 745 104
Proteobacteria 614 499
Selected 1,198 446