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Table 1 Summary of datasets analyzed in this study

From: Functional genomic delineation of TLR-induced transcriptional networks

Dataset MmBMM MmRAW HsM1 HsM2
Reference Gilchrist et al. (2006) [8] [11] Nau et al. (2002) [9] Jeffrey et al. (2006) [10]
Organism Mouse Mouse Human Human
Cells BMM RAW264.7 Mph Mph
Stimulators LPS, CpG, PAM2, PAM3, PIC, R848 LPS, CpG, PAM2, PAM3, PIC, R848 LPS, PIC LPS
Time-points 0 h, 20 m, 40 m, 1 h, 80 m, 2 h, 8 h*, 24 h* 0 h, 1 h*, 2 h*, 4 h, 8 h*, 24 h* 0 h, 1 h, 2 h, 6 h, 12 h, 24 h 0 h, 4 h
Microarray Affymetrix MG430 2.0 Two-channel oligonucleotide chip (Operon) Affymetrix HU6800 Affymetrix HGU133A
# distinct annotated genes 15,277 11,442 5,215 7,981
Replicates Triplicates Quadrareplicates One (two at time 0 h) Duplicates
  1. * time-points measured only for LPS