Table 1 Top 100 genes identified in Duroc

211570

Similar to hypothetical protein (LOC475155)

XM_532385.1

0.746

4.28e-12

103463

Cytochrome P450 17A1 (CYP17A1)

NM_214428.1

1.227

6.05e-12

218005

1.100

8.28e-12

217877

Ferritin, light polypeptide (FTL)

NM_000146.3

1.033

1.27e-11

209883

0.550

1.29e-11

213434

Eukaryotic translation elongation factor 1 alpha 1 (EEF1A1)

NM_001402.4

1.084

1.29e-11

203529

Cystatin F (leukocystatin) (CST7)

NM_003650.2

0.726

1.57e-11

102025

Cytochrome b-5 (CYB5)

NM_001001770.1

0.529

1.57e-11

210231

Ferritin, light polypeptide (FTL)

NM_000146.3

1.032

1.57e-11

215500

Ferritin, light polypeptide (FTL)

NM_000146.3

0.986

5.24e-11

210851

Ferritin, light polypeptide (FTL)

NM_000146.3

1.006

6.23e-11

216813

Kallikrein 6 (neurosin, zyme) (KLK6), transcript variant C

NM_001012965.1

0.892

6.45e-11

211448

Golgi phosphoprotein 3-like (GOLPH3L)

NM_018178.3

0.927

1.55e-10

103177

Cytochrome b-5 (CYB5)

NM_001001770.1

0.768

9.43e-10

216525

Chromosome 22 open reading frame 16 (C22orf16)

NM_213720.1

0.639

1.52e-09

214052

Carbonyl reductase/NADP-retinol dehydrogenase (DHRS4)

NM_214019.1

0.889

1.64e-09

218092

Procollagen C-endopeptidase enhancer (PCOLCE)

NM_002593.2

0.606

1.69e-09

100650

Brain expressed, X-linked 1 (BEX1)

NM_018476.2

0.537

1.98e-09

216417

DNA helicase HEL308 (HEL308)

NM_133636.1

0.757

2.11e-09

217089

Chromosome 20 open reading frame 22 (C20orf22)

NM_015600.2

0.812

2.19e-09

211821

Phosphatidylserine receptor (PTDSR)

NM_015167.1

0.891

2.61e-09

213358

Microtubule-associated protein 1 light chain 3 alpha (MAP1LC3A)

NM_032514.2

0.811

3.78e-09

206784

Ferritin heavy-chain (FTH1)

NM_213975.1

0.478

4.72e-09

216513

Prostate androgen-regulated transcript 1 (PART1)

NM_016590.2

0.693

4.72e-09

101322

Ferredoxin (FDX1)

NM_214065.1

0.498

8.99e-09

215969

N-acetylglucosamine-1-phosphotransferase, gamma subunit (GNPTG)

NM_032520.3

0.517

1.67e-08

211898

POU domain, class 3, transcription factor 2 (POU3F2)

NM_005604.2

0.643

3.56e-08

209731

Ferritin heavy-chain (FTH1)

NM_213975.1

0.595

3.56e-08

214602

Acetyl-Coenzyme A carboxylase alpha (ACACA), transcript variant 2

NM_198839.1

0.473

6.06e-08

100718

Adenylate kinase 3 (AK3)

NM_016282.2

0.445

6.06e-08

213748

Hypothetical protein LOC284106 (LOC284106)

XM_375449.1

0.304

7.54e-08

216045

Phosphodiesterase 4D, cAMP-specific (PDE4D)

NM_006203.3

0.670

7.54e-08

218317

Ferritin heavy-chain (FTH1)

NM_213975.1

0.332

8.53e-08

211683

Ferritin heavy-chain (FTH1)

NM_213975.1

0.537

9.79e-08

202380

Protein phosphatase 1, regulatory subunit 2 pseudogene 3 (PPP1R2P3)

NR_002168.1

0.497

1.16e-07

103450

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (HMGCS1)

NM_002130.4

0.387

1.16e-07

210738

Ferritin heavy-chain (FTH1)

NM_213975.1

0.538

1.65e-07

217101

Leucine zipper protein 1 (LUZP1)

NM_033631.2

0.741

1.84e-07

209872

Aldo-keto reductase family 1, member C4 (AKR1C4)

NM_001818.2

0.634

3.65e-07

101435

Muscle-specific intermediate filament desmin (LOC396725)

NM_001001535.1

0.559

4.57e-07

207680

Myelin expression factor 2 (MYEF2)

NM_016132.2

0.344

8.37e-07

103619

Glucan (1,4-alpha-), branching enzyme 1 (GBE1)

NM_000158.1

0.417

1.44e-06

205158

Glutathione S-transferase (MGST1)

NM_214300.1

0.447

1.59e-06

103416

Peroxiredoxin 3 (PRDX3), nuclear gene encoding mitochondrial protein

NM_014098.2

0.436

1.68e-06

210951

Ferritin heavy-chain (FTH1)

NM_213975.1

0.491

1.94e-06

214541

Homeo box (H6 family) 1 (HMX1)

NM_018942.1

0.334

2.17e-06

217401

Phosphate regulating gene (Phex)

NM_011077.1

0.592

2.82e-06

201622

Hypothetical protein LOC285016 (LOC285016)

NM_001002919.1

0.591

3.08e-06

217377

0.607

3.40e-06

217497

Similar to coronin, actin binding protein, 2B (LOC517030)

XM_595194.1

0.507

3.43e-06

101570

Sorting nexin 3 (SNX3), transcript variant 1

NM_003795.3

0.230

3.61e-06

216333

Brca1 associated protein 1 (Bap1)

NM_027088.1

0.297

3.74e-06

101369

Translocase of inner mitochondrial membrane 13 homolog (TIMM13)

NM_012458.2

0.333

3.98e-06

216897

Zinc finger protein 229 (ZNF229)

NM_014518.1

0.696

3.98e-06

201672

0.411

4.07e-06

100874

Ubiquitin-conjugating enzyme E2R 2 (UBE2R2)

NM_017811.3

-0.453

4.31e-06

217389

SMAD, mothers against DPP homolog 1 (Drosophila) (SMAD1)

NM_001003688.1

0.623

5.08e-06

103364

Sulfotransferase family, cytosolic, 2A, member 1 (SULT2A1)

NM_003167.2

0.325

5.08e-06

214446

0.484

5.08e-06

103263

Retinol dehydrogenase 12 (all-trans and 9-cis) (RDH12)

NM_152443.1

0.336

6.64e-06

220907

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (HMGCS1)

NM_002130.4

0.363

7.29e-06

217413

Suppressor of cytokine signaling 5 (SOCS5), transcript variant 1

NM_014011.4

0.609

8.04e-06

209887

0.416

8.52e-06

211211

KIAA0999 protein (KIAA0999)

NM_025164.3

0.284

9.46e-06

104110

Cytochrome P450 51 (CYP51)

NM_214432.1

0.365

9.98e-06

204992

0.381

1.12e-05

100545

Isopentenyl-diphosphate delta isomerase (IDI1)

NM_004508.2

0.365

1.38e-05

100618

Myelin basic protein (MBP)

NM_001001546.1

0.272

1.38e-05

104176

Aminolevulinate, delta-, synthase 1 (ALAS1), transcript variant 1

NM_000688.4

0.407

1.42e-05

211043

Testis expressed sequence 261 (TEX261)

NM_144582.2

0.390

1.42e-05

209191

Chromosome 20 open reading frame 50 (C20orf50)

XM_046437.7

0.416

1.42e-05

221311

0.331

1.42e-05

201823

Cytochrome b-5 (CYB5)

NM_001001770.1

0.439

1.66e-05

209002

Malic enzyme 2, NAD(+)-dependent, mitochondrial (ME2)

NM_002396.3

-0.232

1.66e-05

212725

Immunoglobulin superfamily, member 8 (IGSF8)

NM_052868.1

0.181

1.89e-05

203290

Hypothetical protein MGC33214 (MGC33214)

NM_153354.2

-0.268

2.10e-05

103537

Regulatory factor X, 2 (influences HLA class II expression) (RFX2)

NM_000635.2

0.495

2.16e-05

211919

0.430

2.16e-05

220629

Chromosome 6 open reading frame 89 (C6orf89)

gi|47271470|ref|

-0.451

2.16e-05

200365

HDCMA18P protein (HDCMA18P)

NM_016648.1

-0.342

2.23e-05

207244

Superoxide dismutase 1, soluble (SOD1)

NM_000454.4

0.267

2.26e-05

102085

Steroid membrane binding protein (PGRMC1)

NM_213911.1

0.265

2.33e-05

103751

Glutathione peroxidase 4 (GPX4)

NM_214407.1

0.447

2.34e-05

204615

Solute carrier organic anion transporter family, member 1B3 (SLCO1B3)

NM_019844.1

0.297

2.65e-05

102131

Integral membrane protein 2B (ITM2B)

NM_021999.2

0.327

2.95e-05

100094

Poly(A) binding protein, cytoplasmic 1 (PABPC1)

NM_002568.3

0.375

3.07e-05

201085

0.344

3.16e-05

219913

Similar to Probable RNA-dependent helicase p68 (LOC505151)

XM_581395.1

0.418

3.21e-05

215566

Protein phosphatase 4 (formerly X), catalytic subunit (PPP4C)

NM_002720.1

0.330

3.37e-05

216418

Similar to omega protein (LOC91353)

NM_001013618.1

0.240

3.54e-05

215949

Hypothetical LOC400120 (LOC400120)

NM_203451.1

0.604

3.56e-05

103431

C-myc binding protein (MYCBP)

NM_012333.3

0.236

3.98e-05

101450

0.306

4.34e-05

209773

Similar to protein RAKc (LOC439947)

XM_495795.1

0.462

4.46e-05

105008

Cytochrome P450 19A2 (CYP19A2)

NM_214430.1

0.418

5.57e-05

103550

Phosphoenolpyruvate carboxykinase 1 (soluble) (PCK1)

NM_002591.2

-0.299

5.57e-05

206124

Solute carrier family 24, member 5 (SLC24A5)

NM_205850.1

-0.211

5.96e-05

212000

Upstream of NRAS (UNR), transcript variant 2

NM_007158.4

0.239

5.96e-05

214660

HSPC038 protein (LOC51123)

NM_016096.2

0.232

6.01e-05