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Table 1 Characteristics of the core PIF/Harbinger-like elements of M. truncatula

From: Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula

Element GenBank sequence no. Position (first base-last base) Element length TPase/orf1 orientation No. of introns in TPase
MtPH-A5-Ia AC132565 126754–132718 5965 bp TP > orf1 2
MtPH-A6-1-Ia AC151598 118204–122278 4075 bp TP > orf1 2
MtPH-A6-2-Ia AC122722 63283–67500 4218 bp TP > orf1 2
MtPH-A6-3-Ia AC144563 2339–7183 (-)* 4845 bp TP > orf1 2
MtPH-A6-4-Ia AC146704 67498–72196 4699 bp TP > orf1 1
MtPH-D-Ia AC135566 96556–99715 (-) 3160 bp TP > orf1 1
MtPH-E-Ia AC135606 48232–52188 3957 bp no orf1 2
MtPH-E-IIa AC139748 47216–50597 3382 bp no orf1 2
MtPH-M-1-Ia (MtMaster) AC144478 46234–51373 5140 bp orf1 > TP 1
MtPH-M-1-IIa AC146861 104340–109602 (-) 5006 bp orf1 > TP 1
MtPH-M-2-Ia AC160098 52670–58188 5519 bp orf1 > TP 2
MtPH-M-2-IIa AC149306 56522–61824 5303 bp orf1 > TP 2
MtPH-M-3-Ia CR962122 73712–77759 4048 bp orf1 > TP 1
  1. * (-) indicates that the sequence of the TE is reverse complement of the original BAC sequence