Table 1 Characteristics of the core PIF/Harbinger-like elements of M. truncatula
From: Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula
Element | GenBank sequence no. | Position (first base-last base) | Element length | TPase/orf1 orientation | No. of introns in TPase |
|---|---|---|---|---|---|
MtPH-A5-Ia | AC132565 | 126754–132718 | 5965 bp | TP > orf1 | 2 |
MtPH-A6-1-Ia | AC151598 | 118204–122278 | 4075 bp | TP > orf1 | 2 |
MtPH-A6-2-Ia | AC122722 | 63283–67500 | 4218 bp | TP > orf1 | 2 |
MtPH-A6-3-Ia | AC144563 | 2339–7183 (-)* | 4845 bp | TP > orf1 | 2 |
MtPH-A6-4-Ia | AC146704 | 67498–72196 | 4699 bp | TP > orf1 | 1 |
MtPH-D-Ia | AC135566 | 96556–99715 (-) | 3160 bp | TP > orf1 | 1 |
MtPH-E-Ia | AC135606 | 48232–52188 | 3957 bp | no orf1 | 2 |
MtPH-E-IIa | AC139748 | 47216–50597 | 3382 bp | no orf1 | 2 |
MtPH-M-1-Ia (MtMaster) | AC144478 | 46234–51373 | 5140 bp | orf1 > TP | 1 |
MtPH-M-1-IIa | AC146861 | 104340–109602 (-) | 5006 bp | orf1 > TP | 1 |
MtPH-M-2-Ia | AC160098 | 52670–58188 | 5519 bp | orf1 > TP | 2 |
MtPH-M-2-IIa | AC149306 | 56522–61824 | 5303 bp | orf1 > TP | 2 |
MtPH-M-3-Ia | CR962122 | 73712–77759 | 4048 bp | orf1 > TP | 1 |