Table 3 Consensus TIR sequences of M. truncatula PIF/Harbinger-like elements
From: Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula
Family | Subfamily | TIR length | TIR sequence |
|---|---|---|---|
MtPH-A5 | 21 bp | 5' GGGKGYGTTTGTTTGAGGGTT 3' | |
MtPH-A6 | 1 | 15 bp | 5' GGGTCCGTTTGGTTC 3' |
| Â | 2 | 15 bp | 5' GGCTMTGTTTGGATT 3' |
| Â | 3 | 22 bp | 5' GGGTCCGTTTGGTTCGAGARTT 3' |
| Â | 4 | 17 bp | 5' GGCTTTGTTTGCGAGTT 3' |
MtPH-D | 12 bp | 5' GGCTWTGTTTGG 3' | |
MtPH-E | 22 bp | 5' GGGCCTGTTTGRAACACTTTTT 3' | |
MtPH-M (MtMaster) | 1 | 14 bp | 5' GTGYRTGTTTGGYA 3' |
| Â | 2 | 14 bp | 5' GYRYGTGTTTGGTT 3' |
| Â | 3 | 14 bp | 5' GNSYSTGTTTGGTT 3' |