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Table 3 Consensus TIR sequences of M. truncatula PIF/Harbinger-like elements

From: Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula

Family Subfamily TIR length TIR sequence
MtPH-A5 21 bp 5' GGGKGYGTTTGTTTGAGGGTT 3'
MtPH-A6 1 15 bp 5' GGGTCCGTTTGGTTC 3'
  2 15 bp 5' GGCTMTGTTTGGATT 3'
  3 22 bp 5' GGGTCCGTTTGGTTCGAGARTT 3'
  4 17 bp 5' GGCTTTGTTTGCGAGTT 3'
MtPH-D 12 bp 5' GGCTWTGTTTGG 3'
MtPH-E 22 bp 5' GGGCCTGTTTGRAACACTTTTT 3'
MtPH-M (MtMaster) 1 14 bp 5' GTGYRTGTTTGGYA 3'
  2 14 bp 5' GYRYGTGTTTGGTT 3'
  3 14 bp 5' GNSYSTGTTTGGTT 3'