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Figure 2 | BMC Genomics

Figure 2

From: A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

Figure 2

Hierarchical Clustering of Correlations of Log(NEU) Data for 1,648 Genes in MPSS and Affymetrix. Plot A shows the Pearson's correlations while Plot B shows the Spearman's rank correlations among the different RNA samples and platforms. Distances for clustering were calculated as 1-r, where r represents correlation coefficient value. A complete linkage algorithm was used for hierarchical clustering. All genes selected for this analysis had a MPSS tag count greater than 4 TPM and were detected as present in Affymetrix microarrays in all eleven samples. Codes for samples are described in Table 1.

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