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Table 3 Pearson's rank correlation of NEU normalized expression data for 1,648 genes in MPSS, Affymetrix and Agilent.

From: A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

 

MCas

MIns

MLes

MRos

AFCa

AFIn

AFLe

AFRo

AGCa

AGIn

AGLe

AGRo

MCas

 

0.46

0.41

0.64

0.66

0.35

0.29

0.50

0.54

0.26

0.19

0.36

MIns

  

0.62

0.56

0.44

0.71

0.58

0.50

0.34

0.56

0.42

0.39

MLes

   

0.50

0.40

0.55

0.70

0.43

0.32

0.44

0.53

0.35

MRos

    

0.63

0.51

0.44

0.76

0.50

0.39

0.31

0.55

AFCa

     

0.68

0.60

0.83

0.74

0.45

0.35

0.54

AFIn

      

0.85

0.77

0.44

0.69

0.53

0.51

AFLe

       

0.69

0.4

0.60

0.67

0.48

AFRo

        

0.59

0.52

0.41

0.65

AGCa

         

0.76

0.67

0.82

AGIn

          

0.85

0.82

AGLe

           

0.80

AGRo

            
  1. The upper triangle represents the Pearson's correlation while the corresponding P-values are all smaller than 0.01. The correlation values greater than 0.8 are shown in bold; values between 0.6 to 0.8 are shown in italics. All genes had measurable abundance values greater than 4 TPM in all MPSS samples and were detected as present in Affymetrix.