Skip to main content

Table 1 H. salinarum genes with a differential translational repression in exponential phase or in stationary phase*1

From: Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea

  

Translational repression factor

Transcript level

ORF

Gene product

Exp

Stat

Stat/exp

  

∅

SD

n

∅

SD

n

∅

SD

n

OE4511R

Hypothetical protein

9.0

3.8

4

1.2

0.2

3

0.1

0.0

3

OE1119F

dTDPglucose 4,6-dehydratase

4.7

 

2

1.2

0.0

2

  

0

OE3538R

Hypothetical protein

3.5

2.0

4

0.9

0.1

2

0.5

0.1

2

OE3049R

Hypothetical protein

2.7

1.8

3

1.2

0.4

3

1.3

0.2

2

OE4187R

Probable DNA-binding protein

2.6

1.1

4

1.4

0.2

2

0.2

0.1

3

OE2082F

Conserved hypothetical protein

2.5

0.2

2

1.1

0.2

2

  

0

OE2024F

Conserved hypothetical protein

2.4

0.6

3

1.1

0.4

2

0.7

 

1

OE1114F

Probable glucose-1-phosphate thymidylyltransferase GraD3

2.4

0.6

3

1.3

0.2

2

1.5

0.1

3

OE1982R

Conserved hypothetical protein

2.2

0.3

2

1.0

0.0

2

1.5

 

1

OE3090R

Conserved hypothetical protein

2.2

0.8

4

1.1

0.3

3

  

0

OE1222R

tRNA adenylyltransferase, CCA-adding

2.2

0.2

2

1.1

0.1

3

2.3

0.7

2

OE2021F

Conserved hypothetical protein

2.1

0.9

4

1.0

0.1

2

0.8

 

1

OE1385F

Conserved hypothetical protein

2.1

0.7

4

1.0

0.2

3

0.9

0.2

2

OE1147R

Protein-L-isoaspartate O-methyltransferase PimT1

2.0

1.2

4

1.0

0.1

2

1.1

0.2

3

OE3470F

Translation initiation factor aIF-1A

0.6

0.2

4

8.4

6.1

3

0.7

0.1

3

OE1405R

Conserved hypothetical protein

2.4

0.9

4

5.1

0.2

3

0.3

0.0

3

OE1083R

Probable transposase (ISH3/ISH27)

1.5

0.4

4

3.1

1.1

2

1.0

0.3

3

OE5071F

Protein kinase weak homolog

0.6

0.3

4

2.7

0.1

3

  

0

OE7017R

Probable transposase (ISH3/ISH27)

0.6

0.2

4

2.7

0.4

3

1.1

0.2

3

OE3100F

Bacterioopsin-linked protein Blp

0.6

0.1

3

2.5

0.3

3

3.2

0.6

3

OE2433A1F

Probable transposase (ISH3/ISH27)

1.0

0.5

4

2.3

0.5

3

1.5

0.4

3

  1. *1All genes are tabulated which have a "translational repression factor" of ≥2 differentially in exponential phase (upper part) or in stationary phase (lower part). The translational repression factor is the quotient of free RNA to polysome-bound RNA (normalized to the average of all genes). If available, also the relative transcript levels of these genes are listed (quotient stationary phase/exponential phase). ORF numbers and gene products were taken from the genome website HaloLex [62]. The columns ∅, SD and n list average value, standard deviation and number of repetitions.