Table 3 Effect of vector forms in different trimming programs
From: An optimized procedure greatly improves EST vector contamination removal
| Â | Â | Trimming Programs | |||
|---|---|---|---|---|---|
| Â | Â | SeqClean | cross_match | LUCY2 | LUCY2(qul) |
CVS | # resulting ESTsa | 14729 | 14870 | 14817 | 14808 |
| Â | # removed ESTs | 306 | 165 | 218 | 227 |
| Â | # incompletely trimmed ESTs | 1128 | 586 | 155 | 156 |
| Â | % contamination | 7.50% | 3.90% | 1.03% | 1.04% |
|  | average length of trimmed ESTs | 551.4 ± 163.4 | 560.7 ± 175.4 | 546.3 ± 176.7 | 539.7 ± 175.6 |
RVS | # resulting ESTsa | 14825 | 14870 | 14793 | 14785 |
| Â | # removed ESTs | 210 | 165 | 242 | 250 |
| Â | # incompletely trimmed ESTs | 12 | 637 | 190 | 193 |
| Â | % contamination | 0.08% | 4.14% | 1.26% | 1.28% |
|  | average length of trimmed ESTs | 543.0 ± 172.1 | 563.5 ± 171.8 | 546.9 ± 176.7 | 540.1 ± 175.6 |