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Table 3 Effect of vector forms in different trimming programs

From: An optimized procedure greatly improves EST vector contamination removal

   Trimming Programs
   SeqClean cross_match LUCY2 LUCY2(qul)
CVS # resulting ESTsa 14729 14870 14817 14808
  # removed ESTs 306 165 218 227
  # incompletely trimmed ESTs 1128 586 155 156
  % contamination 7.50% 3.90% 1.03% 1.04%
  average length of trimmed ESTs 551.4 ± 163.4 560.7 ± 175.4 546.3 ± 176.7 539.7 ± 175.6
RVS # resulting ESTsa 14825 14870 14793 14785
  # removed ESTs 210 165 242 250
  # incompletely trimmed ESTs 12 637 190 193
  % contamination 0.08% 4.14% 1.26% 1.28%
  average length of trimmed ESTs 543.0 ± 172.1 563.5 ± 171.8 546.9 ± 176.7 540.1 ± 175.6
  1. a number of ESTs whose length is equal to or greater than 100 bases after being processed by a vector trimming program as indicated