Genome representationa | Copy numbersb | |||||
---|---|---|---|---|---|---|
Clusters (contigs) | Total GR | Genome proportion [%] | Copies/1C (domain) | Element length [bp] | Genome proportion [%] | |
Retroelements | ||||||
Ty3/gypsy | ||||||
Ogre-like | 77 (632) | 6,754,965 | 20.30 | 65,000 (RT, PBS) | 22,000 | 33.26 |
Peabody | 5 (42) | 703,484 | 2.11 | 16,000 (RT) | 8,000 | 2.98 |
PIGY | 23 (70) | 361,389 | 1.09 | 4,700 (RT) | 13,600 | 1.49 |
Cyclops | 15 (52) | 221,925 | 0.67 | 2,700 (RT) | 12,300 | 0.77 |
Ty1/copia | ||||||
Ps-copia-1/751 | 6 (14) | 690,339 | 2.07 | |||
full-length | 8,000 (RT) | 8,000 | 1.49 | |||
solo-LTR | 9,000 | 1,400 | 0.29 | |||
SIRE | 9 (87) | 548,280 | 1.65 | (1.65) | ||
PDR | 6 (24) | 214,755 | 0.65 | 1,100 (RT) | 4,000 | 0.10 |
Other copia | 16 (26) | 101,805 | 0.31 | (0.31) | ||
Other RE | 17 (111) | 878,773 | 2.64 | (2.64) | ||
DNA transposons | ||||||
MuDR | 7 (24) | 68,247 | 0.21 | (0.21) | ||
En/Spm | 5 (9) | 50,845 | 0.15 | (0.15) | ||
Tandem repeats | ||||||
45S rDNA | 1 (6) | 348,987 | 1.05 | 5,300 | 8,680 | 1.07 |
5S rDNA | 1 (3) | 13,134 | 0.04 | (0.04) | ||
PisTR-B | 1 (7) | 147,113 | 0.44 | (0.44) | ||
Other satellites | 16 (73) | 381,148 | 1.15 | (1.15) | ||
Total : | 34.5 % | 48.0 % |