Skip to main content

Advertisement

Table 5 Database entries of genes from 24 cyanobacterial genomes encoding putative L-arginine decarboxylases (A1), agmatinases (A2.1), agmatine deiminases (A2.2), N-carbamoylputrescine hydrolases (A2.3), putrescine oxidases or putrescine transaminases (A3), and 4-aminobutyraldehyde dehydrogenases (A4) of the L-arginine decarboxylase pathway.

From: Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803

Enzyme A1 A2.1 A2.2 A2.3 A3 A4
Marine species
Prochlorococcus marinus SS 120 Pro1112, Pro0049 Pro1849 n.d Pro1045 n.d Pro1319
Prochlorococcus marinus str. MIT 9211 P9211_03242, P9211_08607 P9211_09067 n.d P9211_03592 n.d P9211_07012
Prochlorococcus marinus MIT 9312 PMT9312_1095, PMT9312_0046 PMT9312_1779 n.d PMT9312_0615 n.d PMT9312_0337
Prochlorococcus marinus MIT 9313 PMT1066, PMT2150 PMT2214 n.d PMT0395 n.d PMT0191
Prochlorococcus marinus MED 4 PMM1084, PMM0045 PMM1686 n.d PMM0615 n.d PMM1215, PMM0331
Prochlorococcus marinus NATL 2A PMN2A_0665, PMN2A_1378 PMN2A_1287 n.d PMN2A_0052 n.d PMN2A_1709
Synechococcus sp. CC 9605 Syncc9605_1621, Syncc9605_2513 Syncc9605_1082Syncc9605_2591 n.d Syncc9605_1134 n.d Syncc9605_0497
Synechococcus sp. CC 9902 Syncc9902_1380, Syncc9902_2172 Syncc9902_2230 n.d Syncc9902_1323 n.d Syncc9902_1838
Synechococcus sp. WH 8102 SYNW0944, SYNW2359 SYNW1412, SYNW2422 n.d SYNW1008 n.d SYNW_1956
Synechococcus sp. WH 7805 WH7805_04481, WH7805_10353 WH7805_09974 n.d WH7805_01902 n.d n.d
Synechococcus sp. WH 5701 WH5701_04905, WH5701_10310 WH5701_03684, WH5701_03860 n.d WH5701_10020, WH5701_10155 n.d WH5701_06196
Synechococcus sp. RS 9917 RS9917_01007, RS9917_06495 RS9917_06190 n.d RS9917_11395 n.d RS9917_02641
Crocosphaera watsonii WH 8501 CwatDRAFT_1880 n.d n.d CwatDRAFT_4111 n.d CwatDRAFT_2611CwatDRAFT_0842 CwatDRAFT_0969 CwatDRAFT_1032
Trichodesmium erythraeum IMS 101 TeryDRAFT_0894, TeryDRAFT_0959, TeryDRAFT_0311 TeryDRAFT4567 n.d TeryDRAFT_0835 n.d TeryDRAFT_3296, TeryDRAFT_3923
Freshwater species
Synechococcus elongatus sp. PCC 6301 Syc0823_d, Syc0510_c n.d SYC1703_c, SYC1643_d Syc1946_d, Syc1745_c n.d Syc1030_d
Synechococcus elongatus sp. PCC 7942 Synpcc7942_0707, Synpcc7942_1037 n.d Synpcc79422402 Synpcc79422461 Synpcc79422145 Synpcc79422358 n.d Synpcc7942_0489
Synechococcus Yellowstone sp. JA-3-3-AB CYA_1002, CYA_0128 CYA_0859 n.d CYA_0558 n.d CYA_0364
Synechococcus Yellowstone sp. JA-2-3Ba (2-13) CYB_2779, CYB_0482 CYB_1744 n.d CYB_1181 n.d CYB_0715, CYB_1893
Thermosynechococcus elongatus BP-1 Tlr1866, Tll1807 n.d. Tlr0111 Tlr0112, Tll0920 n.d Tlr0221
Synechocystis sp. PCC 6803 Sll1683, Slr0662, Slr1312 Sll1077, Sll0228 n.d Sll0601, Sll1640 n.d Sll1495, Slr0370
Gloeobacter violaceus PCC 7421 Gll4070, Gll3478 n.d Glr1681 Glr1682, Glr2043 n.d Gll2207, Gll1504, Glr3848, Gll2805
Nostoc sp. PCC 7120 All3401, All4887 Alr2310 n.d Alr2001 n.d Alr2826, Alr3771, All3556, All5022
Nostoc punctiforme PCC 73102 Npun02000556, Npun02000612 Npun02002114 n.d Npun02002053 n.d Npun02003427, Npun02002895, Npun02002692, Npun02003702
Anabaena variabilis ATCC 29413 Ava_2157, Ava_3423 Ava_0127 n.d Ava_5061 n.d Ava_1107, Ava_1554, Ava_3534, Ava_2258
  1. N.d. = not detected.