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Figure 12 | BMC Genomics

Figure 12

From: Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets

Figure 12

Immunohistochemistry data. In this example, the goal was to show how to obtain immunohistochemistry data for the E-cadherin gene. 1. Filter: one can restrict the query by clicking on the "Filters" node on the left, expanding the filter section "GENE RELATED ACCESSIONS:" using the "+" box, choosing the "ID" list limit simply by clicking on the left checkbox and selecting the "HGNC Symbol(s)" and typing in the E-cadherin gene symbol "CDH1". 2. Attributes: one can click on the "Attributes" node on the left and start choosing attributes from the "General Gene Features" page. In this example, one can expand the "PANCREATIC EXPRESSION:" section, check "Ensembl Gene ID", "Specimen or Cell type", "Platform" under "Expression Attributes" and "Study" under "Origin of data". Once can also expand the "GENE:" section to check "HGNC Symbol" under the "External References (max 3)" and "ANTIBODIES:" to check "Antibody ID". 3. Results: one can click the "Results" button to view the results. The antibody ID for "CDH1" is displayed with a hyper-link to the Human Protein Atlas where immunohistochemistry data for normal and cancer tissues, as well as for cell lines, can be displayed.

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