Table 3 Top twenty TF-encoding genes associated with the highest number and total length of human-fugu CNEs. For genes that are part of conserved clusters, we averaged out the number or length of CNEs present in the whole cluster over the number of genes in that cluster.
Gene ID | Gene name | Description | Number of CNEs | Length of CNEs (kb) |
|---|---|---|---|---|
ENSG00000134138 | MEIS2 | Homeobox protein Meis2 | 79 | 11.98 |
ENSG00000177508 | IRX3 | Iroquois-class homeodomain protein IRX-3 | 68 | 10.87 |
ENSG00000169554 | ZFHX1B | Zinc finger homeobox protein 1b | 76 | 10.25 |
ENSG00000143032 | BARHL2 | BarH-like 2 homeobox protein. | 56 | 10.09 |
ENSG00000169946 | ZFPM2 | Zinc finger protein ZFPM2 | 49 | 9.90 |
ENSG00000167081 | PBX3 | Pre-B-cell leukemia transcription factor 3 | 57 | 9.10 |
ENSG00000091656 | ZFHX4 | zinc finger homeodomain 4 | 77 | 9.05 |
ENSG00000151514 | SALL3 | Sal-like protein 3 | 59 | 8.94 |
ENSG00000170549 | IRX1 | Iroquois-class homeodomain protein IRX-1 | 48 | 8.67 |
ENSG00000128573 | FOXP2 | Forkhead box protein P2 | 57 | 8.41 |
ENSG00000121297 | ZNF537 | Teashirt homolog 3 | 59 | 7.38 |
ENSG00000143995 | MEIS1 | Homeobox protein Meis1. | 63 | 7.00 |
ENSG00000148737 | TCF7L2 | Transcription factor 7-like 2 | 42 | 6.91 |
ENSG00000153234 | NR4A2 | Orphan nuclear receptor NR4A2 | 38 | 6.73 |
ENSG00000159387 | IRX6 | Iroquois-class homeodomain protein IRX-6 | 40.5 | 6.54 |
ENSG00000176842 | IRX5 | Iroquois-class homeodomain protein IRX-5 | 40.5 | 6.54 |
ENSG00000110693 | SOX6 | Transcription factor SOX-6. | 47 | 6.41 |
ENSG00000143013 | LMO4 | LIM domain transcription factor LMO4 | 32 | 5.92 |
ENSG00000164853 | XP_496843.1 | PREDICTED: similar to Uncx4.1 | 31 | 5.74 |
ENSG00000075891 | PAX2 | Paired box protein Pax-2. | 37 | 5.68 |