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Table 2 Protein domains of genes identified by RaSH

From: Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process

Gene Amino acids Protein domain E-value % aligned Position
cpc2 292 WD40 2.0E-60 93.1% 3–286
phr1 591 Deoxyribodipyrimidine photolyase 7.0E-124 99.3% 96–584
   FAD_binding_7 2.0E-97 100% 316–587
rpl7 248 Ribosomal_L7 5.0E-66 100% 88–247
   Ribosomal_L30 2.0E-14 100% 87–139
ubi4 305 Ubiquitin 7.0E-33 100% 1–76
   Ubiquitin 7.0E-33 100% 77–152
   Ubiquitin 7.0E-33 100% 153–228
   Ubiquitin 7.0E-33 100% 229–304
tre9347 700 NAD_synthase 3.0E-59 99.2% 328–653
   Carbon-nitrogen hydrolase 1.0E-18 100% 6–201
   Predicted amidohydrolase 4.0E-27 91.6% 5–282
tre10571 534 Major facilitator superfamily MFS_1 4.0E-12 100% 31–443
   Arabinose efflux permease 7.0E-13 46.7% 26–208
   Fungal trichothecene efflux pump (TRI12) 2.0E-06 34.3% 102–303
tre16112 304 Hydroxybenzoate polyprenyltransferase 2.0E-32 99.7% 2–289
   UbiA prenyltransferase family 5.0E-23 100% 24–301
tre20863 648 Succinate dehydrogenase/fumarate reductase 2.0E-168 100% 56–631
   FAD binding domain 2.0E-140 99.4% 162–492
   Aspartate oxidase 1.0E-92 93.8% 85–618
   Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain 4.0E-44 100% 513–648
tre22454 180 NTPase/HAM1 1.0E-54 100% 5–178
   Xanthosine triphosphate pyrophosphatase 2.0E-45 96.9% 5–180
tre22667 193 Ribosomal protein L6P/L9E 4.0E-30 97.2% 1–187
   Ribosomal protein L6 7.0E-07 100% 97–180
tre31929 270 Adenylate kinase 3.0E-75 100% 44–231
   Adenylate kinase, active site lid 2.0E-12 100% 167–202
tre35050 104 - - - -
tre39031 711 Peptidase_M49 6.0E-170 98.8% 143–709
tre39397 465 Sugar (and other) transporter 7.0E-13 87.1% 44–462
tre40105 331 - - - -
tre41865 183 Perilipin 2.0E-04 27.4% 15–110
tre42719 537 IMP dehydrogenase/GMP reductase domain 1.0E-159 99.4% 42–526
   CBS domain 3.0E-13 93.2% 130–236
   Predicted transcriptional regulator 7.0E-09 36.7% 130–238
   NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding superfamily domain 1.0E-04 99.1% 195–397
tre45629 356 Porphyromonas-type peptidyl-arginine deiminase 1.0E-67 100% 6–353
tre72859 114 - - - -