TY - JOUR AU - Ghedin, E. AU - Sengamalay, N. A. AU - Shumway, M. AU - Zaborsky, J. AU - Feldblyum, T. AU - Subbu, V. AU - Spiro, D. J. AU - Sitz, J. AU - Koo, H. AU - Bolotov, P. AU - Dernovoy, D. AU - Tatusova, T. AU - Bao, Y. AU - St George, K. AU - Taylor, J. AU - Lipman, D. J. AU - Fraser, C. M. AU - Taubenberger, J. K. AU - Salzberg, S. L. PY - 2005 DA - 2005// TI - Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution JO - Nature VL - 437 UR - https://doi.org/10.1038/nature04239 DO - 10.1038/nature04239 ID - Ghedin2005 ER - TY - JOUR AU - Claverie, J. M. PY - 2006 DA - 2006// TI - Viruses take center stage in cellular evolution JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-6-110 DO - 10.1186/gb-2006-7-6-110 ID - Claverie2006 ER - TY - JOUR AU - Forterre, P. PY - 2006 DA - 2006// TI - Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0510333103 DO - 10.1073/pnas.0510333103 ID - Forterre2006 ER - TY - JOUR AU - Koonin, E. V. AU - Senkevich, T. G. AU - Dolja, V. V. PY - 2006 DA - 2006// TI - The ancient Virus World and evolution of cells JO - Biol Direct VL - 1 UR - https://doi.org/10.1186/1745-6150-1-29 DO - 10.1186/1745-6150-1-29 ID - Koonin2006 ER - TY - JOUR AU - Raoult, D. AU - Audic, S. AU - Robert, C. AU - Abergel, C. AU - Renesto, P. AU - Ogata, H. AU - La Scola, B. AU - Suzan, M. AU - Claverie, J. M. PY - 2004 DA - 2004// TI - The 1.2-megabase genome sequence of Mimivirus JO - Science VL - 306 UR - https://doi.org/10.1126/science.1101485 DO - 10.1126/science.1101485 ID - Raoult2004 ER - TY - JOUR AU - Claverie, J. M. AU - Ogata, H. AU - Audic, S. AU - Abergel, C. AU - Suhre, K. AU - Fournier, P. E. PY - 2006 DA - 2006// TI - Mimivirus and the emerging concept of "giant" virus JO - Virus Res VL - 117 UR - https://doi.org/10.1016/j.virusres.2006.01.008 DO - 10.1016/j.virusres.2006.01.008 ID - Claverie2006 ER - TY - JOUR AU - Wilson, W. H. AU - Schroeder, D. C. AU - Allen, M. J. AU - Holden, M. T. AU - Parkhill, J. AU - Barrell, B. G. AU - Churcher, C. AU - Hamlin, N. AU - Mungall, K. AU - Norbertczak, H. AU - Quail, M. A. AU - Price, C. AU - Rabbinowitsch, E. AU - Walker, D. AU - Craigon, M. AU - Roy, D. AU - Ghazal, P. PY - 2005 DA - 2005// TI - Complete genome sequence and lytic phase transcription profile of a Coccolithovirus JO - Science VL - 309 UR - https://doi.org/10.1126/science.1113109 DO - 10.1126/science.1113109 ID - Wilson2005 ER - TY - JOUR AU - Ogata, H. AU - Claverie, J. M. PY - 2007 DA - 2007// TI - Unique genes in giant viruses: Regular substitution pattern and anomalously short size JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.6358607 DO - 10.1101/gr.6358607 ID - Ogata2007 ER - TY - STD TI - NCBI Viral Genome Resources. [http://www.ncbi.nlm.nih.gov/genomes/VIRUSES/viruses.html] UR - http://www.ncbi.nlm.nih.gov/genomes/VIRUSES/viruses.html ID - ref9 ER - TY - CHAP AU - Donelli, G. PY - 1968 DA - 1968// TI - Isolamento di un batteriofago di eccezionali dimensioni attivo su B.megatherium BT - Atti Accad Naz Lincei--Rend Clas Sci Fis Mat Nat ID - Donelli1968 ER - TY - JOUR AU - Suhre, K. PY - 2005 DA - 2005// TI - Gene and genome duplication in Acanthamoeba polyphaga Mimivirus JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.22.14095-14101.2005 DO - 10.1128/JVI.79.22.14095-14101.2005 ID - Suhre2005 ER - TY - JOUR AU - Iyer, L. M. AU - Aravind, L. AU - Koonin, E. V. PY - 2001 DA - 2001// TI - Common origin of four diverse families of large eukaryotic DNA viruses JO - J Virol VL - 75 UR - https://doi.org/10.1128/JVI.75.23.11720-11734.2001 DO - 10.1128/JVI.75.23.11720-11734.2001 ID - Iyer2001 ER - TY - JOUR AU - Espagne, E. AU - Dupuy, C. AU - Huguet, E. AU - Cattolico, L. AU - Provost, B. AU - Martins, N. AU - Poirie, M. AU - Periquet, G. AU - Drezen, J. M. PY - 2004 DA - 2004// TI - Genome sequence of a polydnavirus: insights into symbiotic virus evolution JO - Science VL - 306 UR - https://doi.org/10.1126/science.1103066 DO - 10.1126/science.1103066 ID - Espagne2004 ER - TY - JOUR AU - Bernardi, G. PY - 1995 DA - 1995// TI - The human genome: organization and evolutionary history JO - Annu Rev Genet VL - 29 UR - https://doi.org/10.1146/annurev.ge.29.120195.002305 DO - 10.1146/annurev.ge.29.120195.002305 ID - Bernardi1995 ER - TY - JOUR AU - Osawa, S. AU - Jukes, T. H. AU - Watanabe, K. AU - Muto, A. PY - 1992 DA - 1992// TI - Recent evidence for evolution of the genetic code JO - Microbiol Rev VL - 56 ID - Osawa1992 ER - TY - JOUR AU - Blaisdell, B. E. AU - Campbell, A. M. AU - Karlin, S. PY - 1996 DA - 1996// TI - Similarities and dissimilarities of phage genomes JO - Proc Natl Acad Sci U S A VL - 93 UR - https://doi.org/10.1073/pnas.93.12.5854 DO - 10.1073/pnas.93.12.5854 ID - Blaisdell1996 ER - TY - JOUR AU - Brocchieri, L. AU - Kledal, T. N. AU - Karlin, S. AU - Mocarski, E. S. PY - 2005 DA - 2005// TI - Predicting coding potential from genome sequence: application to betaherpesviruses infecting rats and mice JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.12.7570-7596.2005 DO - 10.1128/JVI.79.12.7570-7596.2005 ID - Brocchieri2005 ER - TY - JOUR AU - Karlin, S. PY - 1998 DA - 1998// TI - Global dinucleotide signatures and analysis of genomic heterogeneity JO - Curr Opin Microbiol VL - 1 UR - https://doi.org/10.1016/S1369-5274(98)80095-7 DO - 10.1016/S1369-5274(98)80095-7 ID - Karlin1998 ER - TY - JOUR AU - Karlin, S. AU - Blaisdell, B. E. AU - Schachtel, G. A. PY - 1990 DA - 1990// TI - Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: data and hypotheses JO - J Virol VL - 64 ID - Karlin1990 ER - TY - JOUR AU - Ikemura, T. PY - 1982 DA - 1982// TI - Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs JO - J Mol Biol VL - 158 UR - https://doi.org/10.1016/0022-2836(82)90250-9 DO - 10.1016/0022-2836(82)90250-9 ID - Ikemura1982 ER - TY - JOUR AU - Akashi, H. PY - 1994 DA - 1994// TI - Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy JO - Genetics VL - 136 ID - Akashi1994 ER - TY - JOUR AU - Zhao, K. N. AU - Gu, W. AU - Fang, N. X. AU - Saunders, N. A. AU - Frazer, I. H. PY - 2005 DA - 2005// TI - Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo JO - Mol Cell Biol VL - 25 UR - https://doi.org/10.1128/MCB.25.19.8643-8655.2005 DO - 10.1128/MCB.25.19.8643-8655.2005 ID - Zhao2005 ER - TY - JOUR AU - Garcia-Vallve, S. AU - Romeu, A. AU - Palau, J. PY - 2000 DA - 2000// TI - Horizontal gene transfer in bacterial and archaeal complete genomes JO - Genome Res VL - 10 UR - https://doi.org/10.1101/gr.130000 DO - 10.1101/gr.130000 ID - Garcia-Vallve2000 ER - TY - JOUR AU - Jain, R. AU - Rivera, M. C. AU - Lake, J. A. PY - 1999 DA - 1999// TI - Horizontal gene transfer among genomes: the complexity hypothesis JO - Proc Natl Acad Sci U S A VL - 96 UR - https://doi.org/10.1073/pnas.96.7.3801 DO - 10.1073/pnas.96.7.3801 ID - Jain1999 ER - TY - JOUR AU - Lawrence, G. PY - 1999 DA - 1999// TI - Gene transfer, speciation, and the evolution of bacterial genomes JO - Curr Opin Microbiol VL - 5 UR - https://doi.org/10.1016/S1369-5274(99)00010-7 DO - 10.1016/S1369-5274(99)00010-7 ID - Lawrence1999 ER - TY - JOUR AU - Nakamura, Y. AU - Itoh, T. AU - Matsuda, H. AU - Gojobori, T. PY - 2004 DA - 2004// TI - Biased biological functions of horizontally transferred genes in prokaryotic genomes JO - Nat Genet VL - 36 UR - https://doi.org/10.1038/ng1381 DO - 10.1038/ng1381 ID - Nakamura2004 ER - TY - JOUR AU - Mrazek, J. AU - Karlin, S. PY - 2007 DA - 2007// TI - Distinctive features of large complex virus genomes and proteomes JO - Proc Natl Acad Sci U S A VL - 104 UR - https://doi.org/10.1073/pnas.0700429104 DO - 10.1073/pnas.0700429104 ID - Mrazek2007 ER - TY - JOUR AU - Karlin, S. AU - Mocarski, E. S. AU - Schachtel, G. A. PY - 1994 DA - 1994// TI - Molecular evolution of herpesviruses: genomic and protein sequence comparisons JO - J Virol VL - 68 ID - Karlin1994 ER - TY - JOUR AU - Karlin, S. AU - Cardon, L. R. PY - 1994 DA - 1994// TI - Computational DNA sequence analysis JO - Annu Rev Microbiol VL - 48 UR - https://doi.org/10.1146/annurev.mi.48.100194.003155 DO - 10.1146/annurev.mi.48.100194.003155 ID - Karlin1994 ER - TY - JOUR AU - Sandberg, R. AU - Branden, C. I. AU - Ernberg, I. AU - Coster, J. PY - 2003 DA - 2003// TI - Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content JO - Gene VL - 311 UR - https://doi.org/10.1016/S0378-1119(03)00581-X DO - 10.1016/S0378-1119(03)00581-X ID - Sandberg2003 ER - TY - JOUR AU - Kliman, R. M. AU - Bernal, C. A. PY - 2005 DA - 2005// TI - Unusual usage of AGG and TTG codons in humans and their viruses JO - Gene VL - 352 UR - https://doi.org/10.1016/j.gene.2005.04.001 DO - 10.1016/j.gene.2005.04.001 ID - Kliman2005 ER - TY - JOUR AU - Liu, J. AU - Glazko, G. AU - Mushegian, A. PY - 2006 DA - 2006// TI - Protein repertoire of double-stranded DNA bacteriophages JO - Virus Res VL - 117 UR - https://doi.org/10.1016/j.virusres.2006.01.015 DO - 10.1016/j.virusres.2006.01.015 ID - Liu2006 ER - TY - JOUR AU - Lobry, J. R. PY - 1996 DA - 1996// TI - Asymmetric substitution patterns in the two DNA strands of bacteria JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025626 DO - 10.1093/oxfordjournals.molbev.a025626 ID - Lobry1996 ER - TY - JOUR AU - Bernardi, G. PY - 2000 DA - 2000// TI - Isochores and the evolutionary genomics of vertebrates JO - Gene VL - 241 UR - https://doi.org/10.1016/S0378-1119(99)00485-0 DO - 10.1016/S0378-1119(99)00485-0 ID - Bernardi2000 ER - TY - JOUR AU - McLean, M. J. AU - Wolfe, K. H. AU - Devine, K. M. PY - 1998 DA - 1998// TI - Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes JO - J Mol Evol VL - 47 UR - https://doi.org/10.1007/PL00006428 DO - 10.1007/PL00006428 ID - McLean1998 ER - TY - JOUR AU - Rocha, E. P. AU - Danchin, A. AU - Viari, A. PY - 1999 DA - 1999// TI - Universal replication biases in bacteria JO - Mol Microbiol VL - 32 UR - https://doi.org/10.1046/j.1365-2958.1999.01334.x DO - 10.1046/j.1365-2958.1999.01334.x ID - Rocha1999 ER - TY - JOUR AU - Rocha, E. PY - 2002 DA - 2002// TI - Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? JO - Trends Microbiol VL - 10 UR - https://doi.org/10.1016/S0966-842X(02)02420-4 DO - 10.1016/S0966-842X(02)02420-4 ID - Rocha2002 ER - TY - JOUR AU - Rocha, E. P. AU - Danchin, A. PY - 2001 DA - 2001// TI - Ongoing evolution of strand composition in bacterial genomes JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003966 DO - 10.1093/oxfordjournals.molbev.a003966 ID - Rocha2001 ER - TY - JOUR AU - Suhre, K. AU - Audic, S. AU - Claverie, J. M. PY - 2005 DA - 2005// TI - Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0506465102 DO - 10.1073/pnas.0506465102 ID - Suhre2005 ER - TY - JOUR AU - Mrazek, J. AU - Karlin, S. PY - 1998 DA - 1998// TI - Strand compositional asymmetry in bacterial and large viral genomes JO - Proc Natl Acad Sci U S A VL - 95 UR - https://doi.org/10.1073/pnas.95.7.3720 DO - 10.1073/pnas.95.7.3720 ID - Mrazek1998 ER - TY - JOUR AU - Grigoriev, A. PY - 1999 DA - 1999// TI - Strand-specific compositional asymmetries in double-stranded DNA viruses JO - Virus Res VL - 60 UR - https://doi.org/10.1016/S0168-1702(98)00139-7 DO - 10.1016/S0168-1702(98)00139-7 ID - Grigoriev1999 ER - TY - JOUR AU - Freeman, J. M. AU - Plasterer, T. N. AU - Smith, T. F. AU - Mohr, S. C. PY - 1998 DA - 1998// TI - Patterns of genome organization in bacteria JO - Science VL - 279 UR - https://doi.org/10.1126/science.279.5358.1827a DO - 10.1126/science.279.5358.1827a ID - Freeman1998 ER - TY - JOUR AU - Hsiao, W. W. AU - Ung, K. AU - Aeschliman, D. AU - Bryan, J. AU - Finlay, B. B. AU - Brinkman, F. S. PY - 2005 DA - 2005// TI - Evidence of a large novel gene pool associated with prokaryotic genomic islands JO - PLoS Genet VL - 1 UR - https://doi.org/10.1371/journal.pgen.0010062 DO - 10.1371/journal.pgen.0010062 ID - Hsiao2005 ER - TY - JOUR AU - Lawrence, J. G. AU - Ochman, H. PY - 1998 DA - 1998// TI - Molecular archaeology of the Escherichia coli genome JO - Proc Natl Acad Sci U S A VL - 95 UR - https://doi.org/10.1073/pnas.95.16.9413 DO - 10.1073/pnas.95.16.9413 ID - Lawrence1998 ER - TY - JOUR AU - Gompels, U. A. AU - Nicholas, J. AU - Lawrence, G. AU - Jones, M. AU - Thomson, B. J. AU - Martin, M. E. AU - Efstathiou, S. AU - Craxton, M. AU - Macaulay, H. A. PY - 1995 DA - 1995// TI - The DNA sequence of human herpesvirus-6: structure, coding content, and genome evolution JO - Virology VL - 209 UR - https://doi.org/10.1006/viro.1995.1228 DO - 10.1006/viro.1995.1228 ID - Gompels1995 ER - TY - JOUR AU - Young, L. S. AU - Dawson, C. W. AU - Eliopoulos, A. G. PY - 2000 DA - 2000// TI - The expression and function of Epstein-Barr virus encoded latent genes JO - Mol Pathol VL - 53 UR - https://doi.org/10.1136/mp.53.5.238 DO - 10.1136/mp.53.5.238 ID - Young2000 ER - TY - JOUR AU - Rawlinson, W. D. AU - Farrell, H. E. AU - Barrell, B. G. PY - 1996 DA - 1996// TI - Analysis of the complete DNA sequence of murine cytomegalovirus JO - J Virol VL - 70 ID - Rawlinson1996 ER - TY - JOUR AU - Prosch, S. AU - Stein, J. AU - Staak, K. AU - Liebenthal, C. AU - Volk, H. D. AU - Kruger, D. H. PY - 1996 DA - 1996// TI - Inactivation of the very strong HCMV immediate early promoter by DNA CpG methylation in vitro JO - Biol Chem Hoppe Seyler VL - 377 UR - https://doi.org/10.1515/bchm3.1996.377.3.195 DO - 10.1515/bchm3.1996.377.3.195 ID - Prosch1996 ER - TY - JOUR AU - Oliveira, S. A. AU - Park, S. H. AU - Lee, P. AU - Bendelac, A. AU - Shenk, T. E. PY - 2002 DA - 2002// TI - Murine cytomegalovirus m02 gene family protects against natural killer cell-mediated immune surveillance JO - J Virol VL - 76 UR - https://doi.org/10.1128/JVI.76.2.885-894.2002 DO - 10.1128/JVI.76.2.885-894.2002 ID - Oliveira2002 ER - TY - JOUR AU - Arase, H. AU - Mocarski, E. S. AU - Campbell, A. E. AU - Hill, A. B. AU - Lanier, L. L. PY - 2002 DA - 2002// TI - Direct recognition of cytomegalovirus by activating and inhibitory NK cell receptors JO - Science VL - 296 UR - https://doi.org/10.1126/science.1070884 DO - 10.1126/science.1070884 ID - Arase2002 ER - TY - JOUR AU - Smith, L. M. AU - Shellam, G. R. AU - Redwood, A. J. PY - 2006 DA - 2006// TI - Genes of murine cytomegalovirus exist as a number of distinct genotypes JO - Virology VL - 352 UR - https://doi.org/10.1016/j.virol.2006.04.031 DO - 10.1016/j.virol.2006.04.031 ID - Smith2006 ER - TY - JOUR AU - Allen, M. J. AU - Forster, T. AU - Schroeder, D. C. AU - Hall, M. AU - Roy, D. AU - Ghazal, P. AU - Wilson, W. H. PY - 2006 DA - 2006// TI - Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.00491-06 DO - 10.1128/JVI.00491-06 ID - Allen2006 ER - TY - JOUR AU - Allen, M. J. AU - Schroeder, D. C. AU - Holden, M. T. AU - Wilson, W. H. PY - 2006 DA - 2006// TI - Evolutionary history of the Coccolithoviridae JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj010 DO - 10.1093/molbev/msj010 ID - Allen2006 ER - TY - JOUR AU - Renesto, P. AU - Abergel, C. AU - Decloquement, P. AU - Moinier, D. AU - Azza, S. AU - Ogata, H. AU - Fourquet, P. AU - Gorvel, J. P. AU - Claverie, J. M. PY - 2006 DA - 2006// TI - Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.00940-06 DO - 10.1128/JVI.00940-06 ID - Renesto2006 ER - TY - JOUR AU - Veillette, A. AU - Latour, S. PY - 2003 DA - 2003// TI - The SLAM family of immune-cell receptors JO - Curr Opin Immunol VL - 15 UR - https://doi.org/10.1016/S0952-7915(03)00041-4 DO - 10.1016/S0952-7915(03)00041-4 ID - Veillette2003 ER - TY - JOUR AU - Zhao, X. AU - Ayer, R. E. AU - Davis, S. L. AU - Ames, S. J. AU - Florence, B. AU - Torchinsky, C. AU - Liou, J. S. AU - Shen, L. AU - Spanjaard, R. A. PY - 2005 DA - 2005// TI - Apoptosis factor EI24/PIG8 is a novel endoplasmic reticulum-localized Bcl-2-binding protein which is associated with suppression of breast cancer invasiveness JO - Cancer Res VL - 65 UR - https://doi.org/10.1158/0008-5472.CAN-04-3377 DO - 10.1158/0008-5472.CAN-04-3377 ID - Zhao2005 ER - TY - JOUR AU - Koonin, E. V. PY - 2005 DA - 2005// TI - Virology: Gulliver among the Lilliputians JO - Curr Biol VL - 15 UR - https://doi.org/10.1016/j.cub.2005.02.042 DO - 10.1016/j.cub.2005.02.042 ID - Koonin2005 ER - TY - JOUR AU - Moreira, D. AU - Lopez-Garcia, P. PY - 2005 DA - 2005// TI - Comment on "The 1.2-megabase genome sequence of Mimivirus" JO - Science VL - 308 UR - https://doi.org/10.1126/science.1110820 DO - 10.1126/science.1110820 ID - Moreira2005 ER - TY - JOUR AU - Suttle, C. A. PY - 2005 DA - 2005// TI - Viruses in the sea JO - Nature VL - 437 UR - https://doi.org/10.1038/nature04160 DO - 10.1038/nature04160 ID - Suttle2005 ER - TY - JOUR AU - Juhala, R. J. AU - Ford, M. E. AU - Duda, R. L. AU - Youlton, A. AU - Hatfull, G. F. AU - Hendrix, R. W. PY - 2000 DA - 2000// TI - Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages JO - J Mol Biol VL - 299 UR - https://doi.org/10.1006/jmbi.2000.3729 DO - 10.1006/jmbi.2000.3729 ID - Juhala2000 ER - TY - JOUR AU - Thiry, E. AU - Meurens, F. AU - Muylkens, B. AU - McVoy, M. AU - Gogev, S. AU - Thiry, J. AU - Vanderplasschen, A. AU - Epstein, A. AU - Keil, G. AU - Schynts, F. PY - 2005 DA - 2005// TI - Recombination in alphaherpesviruses JO - Rev Med Virol VL - 15 UR - https://doi.org/10.1002/rmv.451 DO - 10.1002/rmv.451 ID - Thiry2005 ER - TY - JOUR AU - Tyler, S. D. AU - Severini, A. PY - 2006 DA - 2006// TI - The complete genome sequence of herpesvirus papio 2 (Cercopithecine herpesvirus 16) shows evidence of recombination events among various progenitor herpesviruses JO - J Virol VL - 80 UR - https://doi.org/10.1128/JVI.80.3.1214-1221.2006 DO - 10.1128/JVI.80.3.1214-1221.2006 ID - Tyler2006 ER - TY - JOUR AU - Roizman, B. PY - 1979 DA - 1979// TI - The organization of the herpes simplex virus genomes JO - Annu Rev Genet VL - 13 UR - https://doi.org/10.1146/annurev.ge.13.120179.000325 DO - 10.1146/annurev.ge.13.120179.000325 ID - Roizman1979 ER - TY - JOUR AU - Karlin, S. AU - Blaisdell, B. E. PY - 1987 DA - 1987// TI - A model for the development of the tandem repeat units in the EBV ori-P region and a discussion of their possible function JO - J Mol Evol VL - 25 UR - https://doi.org/10.1007/BF02100015 DO - 10.1007/BF02100015 ID - Karlin1987 ER - TY - JOUR AU - Li, L. AU - Donly, C. AU - Li, Q. AU - Willis, L. G. AU - Keddie, B. A. AU - Erlandson, M. A. AU - Theilmann, D. A. PY - 2002 DA - 2002// TI - Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata JO - Virology VL - 297 UR - https://doi.org/10.1006/viro.2002.1411 DO - 10.1006/viro.2002.1411 ID - Li2002 ER - TY - JOUR AU - Goldenfeld, N. AU - Woese, C. PY - 2007 DA - 2007// TI - Biology's next revolution JO - Nature VL - 445 UR - https://doi.org/10.1038/445369a DO - 10.1038/445369a ID - Goldenfeld2007 ER - TY - STD TI - Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F: The Marine Viromes of Four Oceanic Regions. PLoS Biol. 2006, 4 (11): ID - ref67 ER - TY - JOUR AU - Pruitt, K. D. AU - Tatusova, T. AU - Maglott, D. R. PY - 2005 DA - 2005// TI - NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki025 DO - 10.1093/nar/gki025 ID - Pruitt2005 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Hattori, M. AU - Aoki-Kinoshita, K. F. AU - Itoh, M. AU - Kawashima, S. AU - Katayama, T. AU - Araki, M. AU - Hirakawa, M. PY - 2006 DA - 2006// TI - From genomics to chemical genomics: new developments in KEGG JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj102 DO - 10.1093/nar/gkj102 ID - Kanehisa2006 ER - TY - JOUR AU - Benson, D. A. AU - Karsch-Mizrachi, I. AU - Lipman, D. J. AU - Ostell, J. AU - Wheeler, D. L. PY - 2006 DA - 2006// TI - GenBank JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj157 DO - 10.1093/nar/gkj157 ID - Benson2006 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Boeckmann, B. AU - Bairoch, A. AU - Apweiler, R. AU - Blatter, M. C. AU - Estreicher, A. AU - Gasteiger, E. AU - Martin, M. J. AU - Michoud, K. AU - O'Donovan, C. AU - Phan, I. AU - Pilbout, S. AU - Schneider, M. PY - 2003 DA - 2003// TI - The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg095 DO - 10.1093/nar/gkg095 ID - Boeckmann2003 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: a multiple sequence alignment method with reduced time and space complexity JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-113 DO - 10.1186/1471-2105-5-113 ID - Edgar2004 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Jones, D. T. AU - Taylor, W. R. AU - Thornton, J. M. PY - 1994 DA - 1994// TI - A mutation data matrix for transmembrane proteins JO - FEBS Lett VL - 339 UR - https://doi.org/10.1016/0014-5793(94)80429-X DO - 10.1016/0014-5793(94)80429-X ID - Jones1994 ER - TY - JOUR AU - Kumar, S. AU - Tamura, K. AU - Nei, M. PY - 2004 DA - 2004// TI - MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment JO - Brief Bioinform VL - 5 UR - https://doi.org/10.1093/bib/5.2.150 DO - 10.1093/bib/5.2.150 ID - Kumar2004 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - JOUR AU - Villarreal, L. P. AU - DeFilippis, V. R. PY - 2000 DA - 2000// TI - A hypothesis for DNA viruses as the origin of eukaryotic replication proteins JO - J Virol VL - 74 UR - https://doi.org/10.1128/JVI.74.15.7079-7084.2000 DO - 10.1128/JVI.74.15.7079-7084.2000 ID - Villarreal2000 ER -