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Table 1 Chromosome localization, nucleotide position, allele variations, average heterozygosity and Fst values of the selected markers. Minor allele frequency (MAF) of HapMap data are reported in the brackets.

From: In silico and in vitro comparative analysis to select, validate and test SNPs for human identification

      European Population African Population Asian Population  
SNPs Chr Nucleotide position Variation Hap map Heterozygosity Minor all. frequency Minor all. frequency Minor all. frequency Fst
rs1779866 1 61,194,420 C/G 0.497 0.43 (0.44) 0.47 (0.50) 0.45 (0.50) 0.0126
rs1922807 2 77,574,919 A/G 0.493 0.46 (0.50) 0.37 (0.40) 0.38 (0.46) 0.0318
rs2278741 2 121,465,927 C/G 0.470 0.27 (0.31) 0.37 (0.40) 0.40 (0.53) 0.1430
rs2962594 5 2,759,621 A/G 0.477 0.38 (037) 0.44 (0.43) 0.45 (0.37) 0.0333
rs905213 5 91,995,945 C/T 0.463 0.38 (0.61) 0.35 (0.35) 0.41 (0.36) 0.0000
rs11242909 6 422,065 C/T 0.536 0.33 (0.30) 0.38 (0.50) 0.39 (0.50) 0.0000
rs3130315 6 32,328,663 A/G 0.467 0.38 (0.38) 0.37 (0.67) 0.46 (0.50) 0.0634
rs7740233 6 150,965,880 C/T 0.477 0.43 (0.44) 0.45 (0.42) 0.44 (0.51) 0.0136
rs10866988 8 5,235,745 C/G 0.500 0.47 (0.46) 0.49 (0.50) 0.40 (0.43) 0.0127
rs1506981 11 6,735,647 A/G 0.487 0.55 (0.53) 0.33 (0.37) 0.34 (0.44) 0.0146
rs1533800 11 33,781,074 A/C 0.487 0.22 (0.49) 0.42 (0.45) 0.41 (0.42) 0.1278
rs1981752 12 16,430,035 C/T 0.487 0.33 (0.36) 0.44 (0.48) 0.49 (0.52) 0.0955
rs478347 12 128,915,904 G/T 0.510 0.49 (0.48) 0.46 (0.45) 0.42 (0.35) 0.0032
rs9562080 13 113,941,879 C/G 0.483 0.50 (0.39) 0.44 (0.45) 0.47 (0.61) 0.0034
rs8033863 15 99,857,192 C/G 0.407 0.37 (0.38) 0.36 (0.43) 0.40 (0.39) 0.0000
rs886528 16 3,751,557 C/T 0.500 0.38 (0.52) 0.40 (0.47) 0.45 (0.43) 0.0450
rs154659 16 88,194,838 C/T 0.467 0.16 (0.29) 0.49 (0.46) 0.34 (0.42) 0.1229
rs2317225 17 2,593,098 A/G 0.490 0.37 (0.38) 0.45 (0.52) 0.39 (0.48) 0.0029
rs11881170 19 62,864,113 A/C 0.497 0.39 (0.44) 0.41 (0.42) 0.35 (0.30) 0.0000
rs380011 21 14,542,669 C/T 0.487 0.39 (0.36) 0.48 (0.48) 0.45 (0.50) 0.0133
rs2267628 X 137,456,866 A/G - 0.49 (0.46) 0.03 (0.02) 0.21 (0.12) -
rs4116821 Y 20,531,728 C/G - 0.37 (0.46) 0.01 (0.19) 0.35 (0.00) -
rs1421177 Y 18,027,988 G/A - 0.00 0.00 0.00 -
rs2032652 Y 20,305,438 C/T - 0.13 (0.00) 0.00 (0.00) 0.46 (0.46) -