Table 4 Summary statistics for SNPs and indels in introns of 12 lines of tomato.
| Â | Loci with SNPs | Number of SNPs | % Loci with SNPs | SNPs/locus | Bases/SNP1 | Loci with indels2 | Number of indels | % Loci with indels | Indels/locus | Bases/indel1 |
|---|---|---|---|---|---|---|---|---|---|---|
Total | 302 | 1487 | 31.2 | 4.9 | 641 | 153 | 282 | 16 | 1.8 | 3378 |
S. lycopersicum | 243 | 980 | 25.1 | 4.0 | 973 | 139 | 248 | 14 | 1.8 | 3841 |
   Breeding lines3 | 162 | 579 | 16.7 | 3.6 | 1647 | 122 | 206 | 13 | 1.7 | 4624 |
US Fresh Market | 53 | 168 | 5.5 | 3.2 | 5675 | 106 | 158 | 11 | 1.5 | 6028 |
Processing | 121 | 402 | 12.5 | 3.3 | 2372 | 118 | 193 | 12 | 1.6 | 4935 |
   var cerasiformae | 161 | 586 | 16.6 | 3.6 | 1627 | 98 | 154 | 10 | 1.6 | 6185 |
S. pimpinellifolium | 275 | 1121 | 28.4 | 4.1 | 851 | 98 | 152 | 10 | 1.6 | 6266 |