Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021

Table 6 Terminator prediction for S. meliloti sra genes

	Sequences or references	Shape type [69]
tmRNA	P6 and P7 stem-loops [41]	V-shaped
sra05-ffs	GGCACGG-n4-TCGTGCC-agcct	I-shaped
sra50-rnpB	GTTTCGTCTC-n4-GAGGCGGAGC-catac	I-shaped
sra56-6S	CGGTC-n6-GATCG-cactt	I-shaped
sra03	CGGCATT-n5-AGTGCCG-ctcga	I-shaped
sra25	GGGCCGCC-n3-GGGCGGCCC-tttt	L-shaped
sra32	TB8 (cf figure 5)	I-shaped
sra33	TG₄TCGG-n4-CTGGCCTCG et T2GCGG-n10-CTGCAA-	V-shaped
sra41	AGGGCCcAAG-n5-CTTGtGGCCCT-cttttttt	L-shaped

ISSN: 1471-2164