Table 1
Library | C | D1 | D2 | R1 | R2 | |
|---|---|---|---|---|---|---|
Condition | All | Control | Desiccating -2°C | Desiccated -14°C | Recovering 8 hr | Recovered 24 hr |
# Reads* | 16379 | 2865 | 3414 | 3449 | 3852 | 2799 |
Average length | 557 | 564 | 548 | 555 | 559 | 560 |
# singletons | 7174 | 2205 | 2432 | 2276 | 2488 | 2186 |
# clusters (> 1 read) | 2795 | 269 | 409 | 463 | 542 | 265 |
# putative transcripts | 9969 | 2474 | 2841 | 2739 | 3030 | 2451 |
Average cluster size | 3.29 | 2.45 | 2.40 | 2.53 | 2.52 | 2.31 |
Largest cluster (# reads) | 30 | 14 | 12 | 10 | 8 | 6 |
# clusters with 2 ESTs | 1469 | 195 | 302 | 318 | 354 | 205 |
# clusters with 3 ESTs | 549 | 48 | 72 | 86 | 133 | 42 |
# clusters with 4–5 ESTs | 464 | 21 | 30 | 48 | 45 | 16 |
# clusters with 6–10 ESTs | 264 | 4 | 4 | 11 | 10 | 2 |
# clusters with > 10 ESTs | 49 | 1 | 1 | 0 | 0 | 0 |
Gene Discovery | 0.44 | 0.75 | 0.71 | 0.64 | 0.65 | 0.78 |
Gene Diversity | 0.61 | 0.85 | 0.83 | 0.79 | 0.79 | 0.88 |
#(%) with significant **Swissprot hits | 3429 (34%) | 790 (32%) | 1085 (38%) | 1014 (37%) | 1130 (37%) | 814 (33%) |
#(%) with significant **trembl hits | 3970 (40%) | 916 (37%) | 1145 (40%) | 1196 (44%) | 1282 (42%) | 934 (38%) |
#(%) with no hits | 5966 (60%) | 1548 (63%) | 1602 (56%) | 1535 (56%) | 1726 (57%) | 1507 (61%) |