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Table 1 Genes differentially expressed between iron near-isogenic lines that cluster with other stress induced genes.

From: Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines

Clone ID

Federated Ratio

P Value

Associated TIGR TC

UNIREF 100

TBLASTX UniRef DB Annotation

Cluster Members

UniRef Blast E-Value

Gm-c1004-1674

0.296

0.2128

GmTC206003

Q9SJQ9

Fructose-Bisphosphate Aldoslase

1Fe, 1PS, 1ST

1.00E-177

Gm-c1028-6047

2.176

0.0012

GmTC220166

Q9M590

Serine/Threonine Protein Kinase

3Fe, 118PS, 107ST

1.00E-103

Gm-c1028-8683

2.204

0.0417

GmTC223013

Q9XHP4

Peroxissomal Copper Containing Oxidase

1Fe, 2PS, 1ST

1.00E-118

Gm-c1028-8247

2.409

0.0391

GmTC225799

Q8H0T8

Initiation Factor eIF-4 gamma

3Fe, 118PS, 107ST

0

Gm-c1004-8188

2.412

0.0366

GmTC224861

Q9XEE6

Zinc Finger Protein, Cys3His

1Fe, 3ST

1.00E-164

Gm-c1028-6637

2.536

0.1137

GmTC219139

Q9ZT44

Zinc Finger Protein, H2

2Fe, 6PS, 11ST

1.00E-55

Gm-c1028-5360

2.701

0.0036

AW831928

Q9C9T6

Zinc Finger Protein

2Fe, 6PS, 11ST

2.00E-19

Gm-c1009-2360

2.597

0.0262

GmTC208403

Q9LDA7

Phosphatase type 2C/

1Fe, 5PS, 6ST/1Fe, 9PS, 5ST

1.00E-107

Gm-c1004-7092

2.639

0.0208

GmTC225579

Q56E95

Ethylene Responsive Transcription Factor

2Fe, 8PS, 33ST

8e-36

Gm-c1009-2900

2.936

0.0078

GmTC214121

Q9FE67

Ethylene Responsive Transcription Factor/Ubiquitin

2Fe, 8PS, 33ST/2Fe

1.00E-24/2.00E-64

Gm-c1028-6890

5.219

0.0163

GmTC214518

Q49976

Ubiquitin

2Fe

2.00E-63

Gm-c1028-8604

2.821

0.0935

GmTC228370

Q9AXD7

Response Regulator Protein (ARR)

1Fe, 1PS, 7ST

1.00E-49

Gm-c1028-8161

2.827

0.0246

GmTC205220

Q69IX0

RER1A

1Fe, 1PS

1.00E-67

Gm-c1028-6556

2.891

0.0340

GmTC228039

Q75HJ3

Chaperonin Protein

1Fe, 1PS

1.00E-136

Gm-c1013-3137

3.01

0.0083

GmTC228924

Q6J4N8

RuBisCo Activase Protein

1Fe, 1PS, 1ST

2.00E-95

Gm-c1013-2333

3.117

0.0026

GmTC209508

Q2V2S5

SNARE Protein

2Fe, 31PS, 15ST

1.00E-143

Gm-c1028-1706

3.138

0.0091

GmTC230619

Q9SKM5

RNA Methyltransferase

1Fe, 1PS

2.00E-47

Gm-c1028-2326

3.156

0.0361

AW704123

Q9ZNZ6

Peroxidase Precursor

1Fe, 22PS, 5ST

1.00E-26

Gm-c1028-1633

3.214

0.0713

GmTC218842

Q9SPJ5

Dihydroflavonol 4 Reductase

1Fe, 4PS, 3ST

2.00E-66

Gm-c1028-5349

3.583

0.0018

GmTC204156

Q9M6R1

Heat Shock Protein Hsp70

1Fe, 2ST/1Fe, 2PS, 1ST

1.00E-115

Gm-c1004-6630

3.593

0.1557

GmTC206397

O80567

RNA Binding Protein

1Fe, 1PS, 1ST

1.00E-48

Gm-c1028-2676

3.776

0.0542

GmC225028

Q946J9

Aquaporin Protein PIP1

2Fe, 31PS, 15ST

1.00E-153

Gm-c1028-4123

5.576

0.027

AW666293

No UniRef

No UniRef Hit E < 10E-4

1Fe, 2PS, 2ST

N/A

Gm-c1028-9215

5.174

0.1109

GmTC216364

Q9MA17

Map Protein Kinase

3Fe, 118PS, 107ST

0

  1. The clone ID identifies the specific clone spotted on the microarray. The Federated Ratio is the fold change between the two near isogenic lines. Fold changes above 2 represent genes over-expressed in the iron inefficient plant compared to the iron efficient plant while fold changes below 0.5 represent genes under-expressed in the iron inefficient plant compared to the iron efficient plant. The TIGR TC represents the tentative consensus sequence to which the clone ID belongs according to TIGR. The UNIPROT annotation is the identified function of genes showing high similarity to the sequence of the TIGR TC. Cluster members indicate the number of genes induced by iron deficiency (Fe), phosphorus depravation (PS), or general abiotic stress (ST) that share high sequence similarity to form a unique cluster grouping. The E-value is the association of the annotation to the TIGR TC sequence.
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BMC Genomics

ISSN: 1471-2164

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