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Table 1 Scaling factors (SF) of 30 arrays hybridized to Affymetrix GeneChips. Table 1 presents the scaling factors (SF) of all 30 arrays, where SF was calculated by setting up the Target Intensity (TGT) to be 100.

From: Intercenter reliability and validity of the rhesus macaque GeneChip

Oregon

Array

Cor1

Cor2

Fib1

Fib2

Pan1

Pan2

Tes1

Tes1

Thy1

Thy2

 

SF

1.29

1.19

0.96

1.22

3.60

3.54

0.91

0.95

1.05

1.04

Nebraska

Array

Br1

Br2

Fib1

Fib2

Pan1

Pan2

Tes1

Tes1

Thy1

Thy2

 

SF

0.92

1.09

1.05

1.20

4.58

3.88

0.94

0.77

1.28

1.27

Yerkes

Array

Br1

Br2

Fib1

Fib2

Pan1

Pan2

Tes1

Tes1

Thy1

Thy2

 

SF

1.13

0.84

0.65

1.09

1.75

2.13

0.89

0.75

0.92

0.80

  1. Cor = cererbral cortex, Fib = fibroblast, Pan = pancreas, Tes = testis and Thy = thymus. 1 and 2 are two technical replicates.
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BMC Genomics

ISSN: 1471-2164

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