A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs

BMC Genomics

Table 3 Comparison of the family composition between the PBC classification and the miFam classification

	*miRNAs*
*Families with more members by PBC*	(10a, 10b, 99a, 99b, 100, 125a, 125b-1, 125b-2, cel-lin-4), (21, mmu-468), (28, 151, mmu-708), (32, dme-mir-31a), (150, dre-150), (134, 412), (182, dme-263a, dme-263b), (188, 362, 500, 501, 502, 532, 660), (190, dre-190b), (191, 637), (197, mmu-705), (302a, 302b, 302c, 302d, dre-430b), (324, 544), (325, 493), (328, 483), (330, 560), (337, cel-241), (342, 610), (345, 378), (374, 542), (383, mmu-672), (422a, 423), (425, dre-731), (451, dme-14), (452, cel-358), (486, 612), (497, 600), (506, 507,508, 509, 510, 513-1, 513-2, 514-1, 514-2, 514-3, 652), (587, 592)
*Families with more members by miFam*	(15a, 15b, 16-1, 16-2, 195), (25, 92-1, 92-2, 92b), (29a, 29b-1, 29b-2, 29c, dme-285), (31, dme-31a, dme-31b), (33, dme-33), (141, 200a, 200b, 200c, 429), (192, 215), (221, 222), (424, mmu-322), (mmu-216a, mmu-216b)
*Families intersect between the two classifications*	(154, 323, 329-1, 329-2, 369, 377, 381, 382, 409, 410, 453, 485, 487a, 487b, 494, 495, 496, 539, 655, 656), (299, 548a-1,548a-2, 548a-3, 548b, 548c, 548d-1, 548d-2, 570, 579, 603), (371, 372, 512-1, 512-2, mmu-290, mmu-291a, mmu-291b, mmu-292, mmu-293, mmu-294, mmu-295)

* "hsa" and "mir" are omitted wherever no confusion can be caused. The miRNAs are human miRNAs if no prefixes are present.

ISSN: 1471-2164