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Table 1 Genes comprising the bovine BPI-like locus

From: Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle

Gene

Alt. Names1

Access. Number

cDNA length(bp)

length aa

pred. MW

# exons

start of first exon

end of last exon

% aa identity2

BPIL1

LPLUNC2, Z

ENSBTAG000000192003,7

1380

459

49

15

145,091

163,442

73 (h), 63 (m)

BPIL3

LPLUNC6, Y

XM_5967625,7

1332

443

49

17

168,578

187,389

79 (h), 68 (m)

RYA3

LPLUNC3

XM_6002935,7

1434

477

50

15

196,342

213,257

80 (h), 82 (m)

RY2G5

LPLUNC4

XM_5939195,7

1722

574

60

15

222,648

256,128

84 (h), 85 (m)

XM_595323

 

XM_595323

362

121

13

3

301,883

304,761

 

BSP30A

 

NM_174803

976

239

26

9

343,495

354,041

 

BSP30C

 

TC2770474,7

1180

251

28

8

374,201

383,493

 

BSP30D

 

Genescan6,7

694

231

25

6

421,589

432,785

 

BSP30B

 

NM_174802

980

240

27

9

453,354

463,730

 

BASE

Latherin

Genescan6,7

687

229

26

7

484,319

495,374

42 (h)

SPLUNC3

X

DQ677839

1029

239

27

7

516,034

527,454

67 (h), 63 (m)

PLUNC

SPLUNC1

NM_174426

1049

255

26

9

536,029

543,093

73 (h), 65 (m)

VEMSGP

LPLUNC1

NM_174697

1624

473

52

15

573,091

594,293

56 (h), 49 (m)

LPLUNC5

 

Genescan6,7

1551

517

57

15

600,122

618,771

50 (h), 59 (m)

  1. (1) [10, 19]
  2. (2) Amino acid sequence identity obtained using ClustalW against either the human (h) or mouse (m) ortholog.
  3. (3) Ensembl database [34]
  4. (4) TIGR database [35]
  5. (5) Bovine RefSeq predicted coding sequence trimmed to align with human and mouse homologs
  6. (6) Predicted cDNA sequence generated from genomic contig using Genescan)
  7. (7) See supplementary material sTable 1 for final nucleotide and amino acid sequences used in the analyses