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Table 1 Microarray detection frequencies for various cytokines in human kidney samples.

From: A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds

  Probe Set ID Gene Name Total samplesa %P ALL %P Normal (n = 15) %P Transplant (n = 36) %P Cancer (n = 30)
1 224211_at Forkhead box P3 (FoxP3) 60 0%   0% 0%
2 221333_at Forkhead box P3 (FoxP3) 81 0% 0% 0% 0%
3 221334_s_at Forkhead box P3 (FoxP3) 81 7% 0% 0% 20%
4 202727_s_at Interferon gamma receptor 1 (IFNγ-R1) 81 100% 100% 100% 100%
5 242903_at Interferon gamma receptor 1 (IFNγ-R1) 60 100%   100% 100%
6 211676_s_at Interferon gamma receptor 1 (IFNγ-R1) 81 99% 100% 97% 100%
7 201642_at Interferon gamma receptor 2 81 91% 80% 89% 100%
8 210354_at Interferon, gamma (IFNγ) 81 10% 0% 3% 23%
9 208200_at Interleukin 1, alpha 81 63% 33% 53% 90%
10 210118_s_at Interleukin 1, alpha 81 1% 0% 0% 3%
11 39402_at Interleukin 1, beta 81 38% 33% 47% 30%
12 205067_at Interleukin 1, beta 81 6% 20% 3% 3%
13 207849_at Interleukin 2 81 4% 7% 6% 0%
14 207906_at Interleukin 3 81 0% 0% 0% 0%
15 207539_s_at Interleukin 4 81 0% 0% 0% 0%
16 207538_at Interleukin 4 81 0% 0% 0% 0%
17 207952_at Interleukin 5 81 0% 0% 0% 0%
18 205207_at Interleukin 6 (IL-6) 81 60% 73% 64% 50%
19 206693_at Interleukin 7 81 64% 40% 64% 77%
20 241808_at Interleukin 7 60 72%   42% 100%
21 202859_x_at Interleukin 8 81 65% 53% 50% 90%
22 211506_s_at Interleukin 8 81 14% 20% 0% 27%
23 208193_at Interleukin 9 81 1% 0% 0% 3%
24 207433_at Interleukin 10 (IL-10) 81 4% 7% 0% 7%
25 206924_at Interleukin 11 81 0% 0% 0% 0%
26 206926_s_at Interleukin 11 81 0% 0% 0% 0%
27 207844_at Interleukin 13 81 0% 0% 0% 0%
28 203085_s_at Transforming growth factor, beta 1 (TGF-β1) 81 49% 67% 0% 100%
29 203084_at Transforming growth factor, beta 1 (TGF-β1) 81 1% 0% 0% 3%
30 207113_s_at Tumor necrosis factor, alpha (TNF-α) 81 9% 0% 0% 23%
  1. a For each probeset the total number of samples was either 60 or 81. The U133A does not contain all of the probesets from the U133Plus2.0. U133A data was used for 15 "Normal" and 6 "Transplant" samples.