Figure 7
From: A kingdom-specific protein domain HMM library for improved annotation of fungal genomes
Effect of different E-value cut-offs on sequence coverage. The average percentage of sequences with at least one identified domain for the 30 original and five new fungal genomes is shown, for three different E-value cut-offs: 1e-1, 1e-5 and 1e-10. The percentage coverage using the FPfam library is higher than using Pfam alone. The best results are obtained when the outputs from the Pfam and FPfam library are combined.