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Table 6 Tandem repeats of LEA genes in the Arabidopsis genome

From: LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

Tandem repeats

      

BLAST 2 SEQUENCES alignment

 

gene 1

gene 2

gene 1 (number)

gene 2 (number)

Cellular loca-lization gene1

Cellular loca-lization gene2

raw score

bit score

expectation value

gene correlator (R2)

At1g20440

At1g20450

4

5

Cytosol

Cytosol

392

155

2.00E-36

0.723

At1g52680

At1g52690

no LEA

7

Cytosol

Cytosol

102

43.9

0.002

0

At2g03740

At2g03850

11

12

Chloroplast

Chloroplast

542

213

5.00E-54

0.893

At2g23110

At2g23120

15

16

Cytosol

Cytosol

194

79.3

4.00E-14

0.033

At2g41260

At2g41280

21

22

secreted

secreted

154

63.9

9.00E-09

0.45

At2g42530

At2g42540

23

24

Chloroplast

Chloroplast

464

183

2.00E-45

0.695

At3g22490

At3g22500

31

32

Cytosol

Cytosol

856

334

4.00E-90

0.857

At3g50970

At3g50980

33

34

Cytosol

Cytosol

144

60.1

7.00E-08

0.192

At5g53260

At5g53270

49

50

Chloroplast

Cytosol

646

253

4.00E-66

n/a*

  1. Comparison of predicted subcellular localization (targetP) and expression (gene correlator on Genevestigator website) of tandem repeats of LEA genes. The coding sequences of the genes were aligned using BLAST 2 SEQUENCES to quantitate the sequence differences between the genes in a pair (gene 1 and gene 2). To test for diversification in expression patterns, the gene correlator function on the Genevestigator website was used to compare expression patterns from publicly available expression profiling data.
  2. *this gene pair is not included on the Affymetrix ATH1 array and therefore no correlation value could be calculated.
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BMC Genomics

ISSN: 1471-2164

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