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Table 5 Subset of differentially expressed cellular genes at each time point.

From: Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection

Pathway or function Clone or oligo name Gene symbol Human refseq Fold change Microarray
     T0 T1 T2 T4 T8 T12  
Class I antigenic Pathway SS00013127 HLA-A NM_002116 NS - - - -4.6 NS Qiagen-NRSP8
  SS00001303 HLA-A NM_002116 NS - - - -3.8 NS Qiagen-NRSP8
  SCAN0007.O.20 SLA Ia NM_002116 - - - -4.9 -4.6 -4.5 SLA/PRV
  SCAN0032.G.07 SLA Ia NM_002116 - - - - -4.0 - SLA/PRV
  SCAN0010.J.21 SLA Ia NM_002116 - - - - - -5.9 SLA/PRV
  SCAA0099.O.04 SLA-7 NM_002116 - - - -3.5 -3.6 - SLA/PRV
  SS00000703 PSMB8 NM_148919 NS - - 5.5 7.8 NS Qiagen-NRSP8
  SCAC0037.O.09 TAP1 NM_000593 - - - - 3.9 - SLA/PRV
  SS00010012 TAP1 NM_000593   - - - -7.8 NS Qiagen-NRSP8
  SS00002173 TAP2 NM_000544 NS - - -6.9 - NS Qiagen-NRSP8
  SS00010176 MICB NM_005931 NS - - 11.1 11.3 NS Qiagen-NRSP8
Class II antigenic pathway SS00000697 HLA-DMB NM_002118 NS - - - -7.7 NS Qiagen-NRSP8
  SS00000661 HLA-DOA NM_002119 NS - - - 5.2 NS Qiagen-NRSP8
  SS00000973 HLA-DQA1 NM_002122 NS - - - 5.2 NS Qiagen-NRSP8
  SCAB0137.B.15 HLA-DOB NM_002120 - - - -4.0 - - SLA/PRV
  SCAC0044.H.08 HLA-DMB NM_002118 - - - -4.6 - - SLA/PRV
  SS00000824 CIITA NM_000246 NS - - - 3.3 NS Qiagen-NRSP8
Immunity (other genes) SS00010182 CD4 NM_000616 NS - 5.1 14.6 14.1 NS Qiagen-NRSP8
  SS00009986 CD69 NM_001781 NS - - -3.1 -5.9 NS Qiagen-NRSP8
  SS00006217 CLEC2L XM_498242 NS - 3.2 11.8 16.1 NS Qiagen-NRSP8
  SS00009653 CLEC5A NM_013252 NS - - -4.0 -6.9 NS Qiagen-NRSP8
  SS00002913 IK NM_006083 NS - - - 5.0 NS Qiagen-NRSP8
  SS00010183 ICAM1 NM_000201 NS - - -4.2 -9.2 NS Qiagen-NRSP8
  SS00003797 IFNAR2 NM_207585 NS - - 3.5 7.9 NS Qiagen-NRSP8
  SS00010797 IFNGR2 NM_005534 NS - - - -6.1 NS Qiagen-NRSP8
  SS00002396 IRF1 NM_002198 NS - - -5.0 -9.3 NS Qiagen-NRSP8
  SS00009562 IRF2 NM_002199 NS - - -4.4 -10.8 NS Qiagen-NRSP8
  SS00000183 IRF3 NM_001571 NS - - - -3.9 NS Qiagen-NRSP8
  SS00003318 IRF5 NM_032643 NS - - -3.5 -7.9 NS Qiagen-NRSP8
  SS00000904 IFNA6 NM_021002 NS - - - -7.2 NS Qiagen-NRSP8
  SS00010817 IFI6 NM_002038 NS - - 6.5 12.5 NS Qiagen-NRSP8
  SS00010811 IFI30 NM_006332 NS - - - -6.1 NS Qiagen-NRSP8
  SS00001608 ISGF3G NM_006084 NS - - - 3.9 NS Qiagen-NRSP8
  SS00009843 IL12A NM_000882 NS - - -3.3 -17.1 NS Qiagen-NRSP8
  SS00009841 IL12B NM_002187 NS - - -7.9 -17.1 NS Qiagen-NRSP8
  SS00008021 TLR8 NM_016610 NS - - -4.6 -5.9 NS Qiagen-NRSP8
  SCAA0015.B.22 PPIA NM_021130.3 - - - -3.9 -4.8 -4.8 SLA/PRV
  SCAU0001.B.05 PPIA NM_021130.3 - - - -3.6 -4.3 -4.7 SLA/PRV
  SS00003892 PPIL1 NM_016059 NS - - - 3.2 NS Qiagen-NRSP8
  SS00001759 PPIL2 NM_148176 NS - - - 4.1 NS Qiagen-NRSP8
  SS00001178 PPIF NM_005729 NS - - - -3.8 NS Qiagen-NRSP8
  SS00001241 PPIG NM_004792 NS - - - -4.3 NS Qiagen-NRSP8
  SS00005782 PPIH NM_006347 NS - - - 5.1 NS Qiagen-NRSP8
  SS00006083 FKBP3 NM_002013 NS - - - -8.3 NS Qiagen-NRSP8
  SS00002702 FKBP4 NM_002014 NS - 3.6 13.0 14.3 NS Qiagen-NRSP8
Apoptosis SS00003686 BNIP1 NM_001205 NS - - - -6.1 NS Qiagen-NRSP8
  SS00000546 BAK1 NM_001188 NS - - - -4.3 NS Qiagen-NRSP8
  SS00010935 BCLAF1 NM_014739 NS - -4.0 -4.6 -6.6 NS Qiagen-NRSP8
  SS00001150 BCL2L1 NM_138578 NS - - -3.4 -6.5 NS Qiagen-NRSP8
  SS00005026 BCL2L14 NM_138723 NS - - - -5.8 NS Qiagen-NRSP8
  SS00000872 CASP1 NM_033293 NS - - 3.6 5.0 NS Qiagen-NRSP8
  SS00000520 CASP3 NM_032991 NS - - - -0.7 NS Qiagen-NRSP8
  SS00004783 CASP7 NM_001227 NS - - - 6.7 NS Qiagen-NRSP8
  SS00003624 CARD6 NM_032587 NS - - 3.5 6.6 NS Qiagen-NRSP8
  SS00000561 DDX58 NM_014314 NS - -3.1 -4.3 -8.3 NS Qiagen-NRSP8
  SS00000329 FAF1 NM_007051 NS - - - 5.8 NS Qiagen-NRSP8
  SS00012494 FAIM2 NM_012306 NS - - -4.6 -10.7 NS Qiagen-NRSP8
ER* stress SS00000384 EIF2A NM_032025 NS - - 3.7 7.1 NS Qiagen-NRSP8
Pathway SS00008645 XBP1 NM_005080 NS - - - -6.4 NS Qiagen-NRSP8
  SS00004223 ATF4 NM_182810 NS - - - -4.1 NS Qiagen-NRSP8
  SS00001308 HSPA8 NM_006597 NS - - - 3.6 NS Qiagen-NRSP8
Nucleic acid SCAB0073.K.18 HIST1H2BK NM_080593 - - - -3.9 -6.8 -4.4 SLA/PRV
Binding SCAA0122.E.09 HIST1H2AL NM_003511 - - - -3.9 -6.0 -3.7 SLA/PRV
  SCAB0057.M.21 HIST1H4J NM_021968 - - - -5.1 -4.4 -4.0 SLA/PRV
  SCAB0015.G.08 HIST3H2BB NM_021968 - - - - -4.2 -5.4 SLA/PRV
  SS00005067 HDAC2 NM_001527 NS - 4.6 8.3 9.1 NS Qiagen-NRSP8
  SS00004784 HDAC3 NM_003883 NS - - -5.5 -10.9 NS Qiagen-NRSP8
  SS00007434 HDAC6 NM_006044 NS - - -3.7 -8.4 NS Qiagen-NRSP8
  SS00003586 HDAC9 NM_014707 NS - -3.5 -4.8 -10.6 NS Qiagen-NRSP8
  SS00004682 HDAC10 NM_032019 NS - - - 3.9 NS Qiagen-NRSP8
  SS00007084 STAT1 NM_007315 NS - - - 7.6 NS Qiagen-NRSP8
  SS00008286 STAT3 NM_139276 NS - - - -4.4 NS Qiagen-NRSP8
  SS00008435 STAT5B NM_012448 NS - - -5.3 -9.9 NS Qiagen-NRSP8
  SS00004427 STAT6 NM_003153 NS - - - -4.6 NS Qiagen-NRSP8
Cytoskeleton SS00003440 ACTC1 NM_005159 NS - - - -8.9 NS Qiagen-NRSP8
  SS00013114 ACTG1 NM_001614 NS 3.3 6.9 19.4 18.2 NS Qiagen-NRSP8
  SS00002774 ACTL6A NM_004301 NS - - - 3.6 NS Qiagen-NRSP8
  SS00005476 ACTRT2 NM_080431 NS - - - -7.2 NS Qiagen-NRSP8
  SS00007431 ACTA4 NM_00492 NS - - -3.7 -3.9 NS Qiagen-NRSP8
  SS00011046 MYO1D NM_015194 NS - - -4.7 -10.2 NS Qiagen-NRSP8
  SS00007818 MYO5A NM_000259 NS - - -3.7 -9.8 NS Qiagen-NRSP8
  1. * ER: Endoplasmic Reticulum
  2. NS: Not Studied
  3. -: not differentially express