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Table 5 Subset of differentially expressed cellular genes at each time point.

From: Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection

Pathway or function

Clone or oligo name

Gene symbol

Human refseq

Fold change

Microarray

    

T0

T1

T2

T4

T8

T12

 

Class I antigenic Pathway

SS00013127

HLA-A

NM_002116

NS

-

-

-

-4.6

NS

Qiagen-NRSP8

 

SS00001303

HLA-A

NM_002116

NS

-

-

-

-3.8

NS

Qiagen-NRSP8

 

SCAN0007.O.20

SLA Ia

NM_002116

-

-

-

-4.9

-4.6

-4.5

SLA/PRV

 

SCAN0032.G.07

SLA Ia

NM_002116

-

-

-

-

-4.0

-

SLA/PRV

 

SCAN0010.J.21

SLA Ia

NM_002116

-

-

-

-

-

-5.9

SLA/PRV

 

SCAA0099.O.04

SLA-7

NM_002116

-

-

-

-3.5

-3.6

-

SLA/PRV

 

SS00000703

PSMB8

NM_148919

NS

-

-

5.5

7.8

NS

Qiagen-NRSP8

 

SCAC0037.O.09

TAP1

NM_000593

-

-

-

-

3.9

-

SLA/PRV

 

SS00010012

TAP1

NM_000593

 

-

-

-

-7.8

NS

Qiagen-NRSP8

 

SS00002173

TAP2

NM_000544

NS

-

-

-6.9

-

NS

Qiagen-NRSP8

 

SS00010176

MICB

NM_005931

NS

-

-

11.1

11.3

NS

Qiagen-NRSP8

Class II antigenic pathway

SS00000697

HLA-DMB

NM_002118

NS

-

-

-

-7.7

NS

Qiagen-NRSP8

 

SS00000661

HLA-DOA

NM_002119

NS

-

-

-

5.2

NS

Qiagen-NRSP8

 

SS00000973

HLA-DQA1

NM_002122

NS

-

-

-

5.2

NS

Qiagen-NRSP8

 

SCAB0137.B.15

HLA-DOB

NM_002120

-

-

-

-4.0

-

-

SLA/PRV

 

SCAC0044.H.08

HLA-DMB

NM_002118

-

-

-

-4.6

-

-

SLA/PRV

 

SS00000824

CIITA

NM_000246

NS

-

-

-

3.3

NS

Qiagen-NRSP8

Immunity (other genes)

SS00010182

CD4

NM_000616

NS

-

5.1

14.6

14.1

NS

Qiagen-NRSP8

 

SS00009986

CD69

NM_001781

NS

-

-

-3.1

-5.9

NS

Qiagen-NRSP8

 

SS00006217

CLEC2L

XM_498242

NS

-

3.2

11.8

16.1

NS

Qiagen-NRSP8

 

SS00009653

CLEC5A

NM_013252

NS

-

-

-4.0

-6.9

NS

Qiagen-NRSP8

 

SS00002913

IK

NM_006083

NS

-

-

-

5.0

NS

Qiagen-NRSP8

 

SS00010183

ICAM1

NM_000201

NS

-

-

-4.2

-9.2

NS

Qiagen-NRSP8

 

SS00003797

IFNAR2

NM_207585

NS

-

-

3.5

7.9

NS

Qiagen-NRSP8

 

SS00010797

IFNGR2

NM_005534

NS

-

-

-

-6.1

NS

Qiagen-NRSP8

 

SS00002396

IRF1

NM_002198

NS

-

-

-5.0

-9.3

NS

Qiagen-NRSP8

 

SS00009562

IRF2

NM_002199

NS

-

-

-4.4

-10.8

NS

Qiagen-NRSP8

 

SS00000183

IRF3

NM_001571

NS

-

-

-

-3.9

NS

Qiagen-NRSP8

 

SS00003318

IRF5

NM_032643

NS

-

-

-3.5

-7.9

NS

Qiagen-NRSP8

 

SS00000904

IFNA6

NM_021002

NS

-

-

-

-7.2

NS

Qiagen-NRSP8

 

SS00010817

IFI6

NM_002038

NS

-

-

6.5

12.5

NS

Qiagen-NRSP8

 

SS00010811

IFI30

NM_006332

NS

-

-

-

-6.1

NS

Qiagen-NRSP8

 

SS00001608

ISGF3G

NM_006084

NS

-

-

-

3.9

NS

Qiagen-NRSP8

 

SS00009843

IL12A

NM_000882

NS

-

-

-3.3

-17.1

NS

Qiagen-NRSP8

 

SS00009841

IL12B

NM_002187

NS

-

-

-7.9

-17.1

NS

Qiagen-NRSP8

 

SS00008021

TLR8

NM_016610

NS

-

-

-4.6

-5.9

NS

Qiagen-NRSP8

 

SCAA0015.B.22

PPIA

NM_021130.3

-

-

-

-3.9

-4.8

-4.8

SLA/PRV

 

SCAU0001.B.05

PPIA

NM_021130.3

-

-

-

-3.6

-4.3

-4.7

SLA/PRV

 

SS00003892

PPIL1

NM_016059

NS

-

-

-

3.2

NS

Qiagen-NRSP8

 

SS00001759

PPIL2

NM_148176

NS

-

-

-

4.1

NS

Qiagen-NRSP8

 

SS00001178

PPIF

NM_005729

NS

-

-

-

-3.8

NS

Qiagen-NRSP8

 

SS00001241

PPIG

NM_004792

NS

-

-

-

-4.3

NS

Qiagen-NRSP8

 

SS00005782

PPIH

NM_006347

NS

-

-

-

5.1

NS

Qiagen-NRSP8

 

SS00006083

FKBP3

NM_002013

NS

-

-

-

-8.3

NS

Qiagen-NRSP8

 

SS00002702

FKBP4

NM_002014

NS

-

3.6

13.0

14.3

NS

Qiagen-NRSP8

Apoptosis

SS00003686

BNIP1

NM_001205

NS

-

-

-

-6.1

NS

Qiagen-NRSP8

 

SS00000546

BAK1

NM_001188

NS

-

-

-

-4.3

NS

Qiagen-NRSP8

 

SS00010935

BCLAF1

NM_014739

NS

-

-4.0

-4.6

-6.6

NS

Qiagen-NRSP8

 

SS00001150

BCL2L1

NM_138578

NS

-

-

-3.4

-6.5

NS

Qiagen-NRSP8

 

SS00005026

BCL2L14

NM_138723

NS

-

-

-

-5.8

NS

Qiagen-NRSP8

 

SS00000872

CASP1

NM_033293

NS

-

-

3.6

5.0

NS

Qiagen-NRSP8

 

SS00000520

CASP3

NM_032991

NS

-

-

-

-0.7

NS

Qiagen-NRSP8

 

SS00004783

CASP7

NM_001227

NS

-

-

-

6.7

NS

Qiagen-NRSP8

 

SS00003624

CARD6

NM_032587

NS

-

-

3.5

6.6

NS

Qiagen-NRSP8

 

SS00000561

DDX58

NM_014314

NS

-

-3.1

-4.3

-8.3

NS

Qiagen-NRSP8

 

SS00000329

FAF1

NM_007051

NS

-

-

-

5.8

NS

Qiagen-NRSP8

 

SS00012494

FAIM2

NM_012306

NS

-

-

-4.6

-10.7

NS

Qiagen-NRSP8

ER* stress

SS00000384

EIF2A

NM_032025

NS

-

-

3.7

7.1

NS

Qiagen-NRSP8

Pathway

SS00008645

XBP1

NM_005080

NS

-

-

-

-6.4

NS

Qiagen-NRSP8

 

SS00004223

ATF4

NM_182810

NS

-

-

-

-4.1

NS

Qiagen-NRSP8

 

SS00001308

HSPA8

NM_006597

NS

-

-

-

3.6

NS

Qiagen-NRSP8

Nucleic acid

SCAB0073.K.18

HIST1H2BK

NM_080593

-

-

-

-3.9

-6.8

-4.4

SLA/PRV

Binding

SCAA0122.E.09

HIST1H2AL

NM_003511

-

-

-

-3.9

-6.0

-3.7

SLA/PRV

 

SCAB0057.M.21

HIST1H4J

NM_021968

-

-

-

-5.1

-4.4

-4.0

SLA/PRV

 

SCAB0015.G.08

HIST3H2BB

NM_021968

-

-

-

-

-4.2

-5.4

SLA/PRV

 

SS00005067

HDAC2

NM_001527

NS

-

4.6

8.3

9.1

NS

Qiagen-NRSP8

 

SS00004784

HDAC3

NM_003883

NS

-

-

-5.5

-10.9

NS

Qiagen-NRSP8

 

SS00007434

HDAC6

NM_006044

NS

-

-

-3.7

-8.4

NS

Qiagen-NRSP8

 

SS00003586

HDAC9

NM_014707

NS

-

-3.5

-4.8

-10.6

NS

Qiagen-NRSP8

 

SS00004682

HDAC10

NM_032019

NS

-

-

-

3.9

NS

Qiagen-NRSP8

 

SS00007084

STAT1

NM_007315

NS

-

-

-

7.6

NS

Qiagen-NRSP8

 

SS00008286

STAT3

NM_139276

NS

-

-

-

-4.4

NS

Qiagen-NRSP8

 

SS00008435

STAT5B

NM_012448

NS

-

-

-5.3

-9.9

NS

Qiagen-NRSP8

 

SS00004427

STAT6

NM_003153

NS

-

-

-

-4.6

NS

Qiagen-NRSP8

Cytoskeleton

SS00003440

ACTC1

NM_005159

NS

-

-

-

-8.9

NS

Qiagen-NRSP8

 

SS00013114

ACTG1

NM_001614

NS

3.3

6.9

19.4

18.2

NS

Qiagen-NRSP8

 

SS00002774

ACTL6A

NM_004301

NS

-

-

-

3.6

NS

Qiagen-NRSP8

 

SS00005476

ACTRT2

NM_080431

NS

-

-

-

-7.2

NS

Qiagen-NRSP8

 

SS00007431

ACTA4

NM_00492

NS

-

-

-3.7

-3.9

NS

Qiagen-NRSP8

 

SS00011046

MYO1D

NM_015194

NS

-

-

-4.7

-10.2

NS

Qiagen-NRSP8

 

SS00007818

MYO5A

NM_000259

NS

-

-

-3.7

-9.8

NS

Qiagen-NRSP8

  1. * ER: Endoplasmic Reticulum
  2. NS: Not Studied
  3. -: not differentially express