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Table 1 Sequence sources and statistics for the three sequential ESTIMA:Songbird assemblies

From: The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

    ESTIMA:Songbird
    BUILD 1 BUILD 2 BUILD 3
Sequence Source Raw reads After filtering 20 K cDNA microarray Lund/Affy microarray  
SB01 2,880 1,840
SB02 18,720 16,360
SB03 (a) 19,104 17,032
SB03 (b) 9,120 5,717  
Duke chromatograms 36,469 23,225   
Duke from NCBI 17,312 16,442   
SB05 11,328 10,056   
SB06 11,040 9,760   
Rockefeller 9,845 9,764   
Raw reads 40,704 86,293 99,349
# SEQS INTO PTA 35,232 58,457 86,784
Pure singlets 10,123 11,823 13,908
Clustered singlets 1,900 2,457 3,662
Total singlets 12,023 14,280 17,570
Contigs 5,855 8,348 14,088
Total unique sequences 17,878 22,628 31,658
Total redundant sequences 17,354 35,829 55,126
Redundancy 49% 61% 64%