|  |  | ESTIMA:Songbird | ||
---|---|---|---|---|---|
 |  |  | BUILD 1 | BUILD 2 | BUILD 3 |
Sequence Source | Raw reads | After filtering | 20 K cDNA microarray | Lund/Affy microarray | Â |
SB01 | 2,880 | 1,840 | √ | √ | √ |
SB02 | 18,720 | 16,360 | √ | √ | √ |
SB03 (a) | 19,104 | 17,032 | √ | √ | √ |
SB03 (b) | 9,120 | 5,717 |  | √ | √ |
Duke chromatograms | 36,469 | 23,225 |  | √ |  |
Duke from NCBI | 17,312 | 16,442 |  |  | √ |
SB05 | 11,328 | 10,056 |  |  | √ |
SB06 | 11,040 | 9,760 |  |  | √ |
Rockefeller | 9,845 | 9,764 |  |  | √ |
Raw reads | 40,704 | 86,293 | 99,349 | ||
# SEQS INTO PTA | 35,232 | 58,457 | 86,784 | ||
Pure singlets | 10,123 | 11,823 | 13,908 | ||
Clustered singlets | 1,900 | 2,457 | 3,662 | ||
Total singlets | 12,023 | 14,280 | 17,570 | ||
Contigs | 5,855 | 8,348 | 14,088 | ||
Total unique sequences | 17,878 | 22,628 | 31,658 | ||
Total redundant sequences | 17,354 | 35,829 | 55,126 | ||
Redundancy | 49% | 61% | 64% |