Topological comparison of methods for predicting transcriptional cooperativity in yeast

BMC Genomics

Table 2 Dependence and overlap between the four literature sources.

	Method N	Method B	Method T	Method C
Method N	45	0.0110	0.0061	0.0117
Method B	0.206	31	0.0068	0.0122
Method T	0.132	0.179	15	0.0099
Method C	0.197	0.222	0.196	46

Upper right side: dependence in terms of mutual information between pairs of methods (none of the values was found to be significantly larger than random expectation). Lower left side: overlap in terms of Jaccard coefficient between pairs of methods (all values were found to be significantly larger than random expectation). Diagonal (in bold): number of CTFPs predicted by each method.

ISSN: 1471-2164