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Table 5 Shortest path length in the regulatory network.

From: Topological comparison of methods for predicting transcriptional cooperativity in yeast

  CTFPs Co-functional TF pairs Co-regulatory TF pairs Co-functional ∩ co-regulatory TF pairs Random TF pairs
Method Mean Mean p-value Mean p-value Mean p-value Mean p-value
Method N 3.731 3.970 5.196·10 -1 3.292 4.162·10 -1 5.000 4.779·10 -1 4.380 1.304·10 -1
Method B 3.500 3.970 3.498·10 -1 3.292 4.123·10 -1 5.000 5.483·10 -1 4.380 6.550·10 -2
Method T 2.846 3.970 5.882·10 -2 3.292 4.878·10 -1 5.000 1.641·10 -1 4.380 1.246·10 -2
Method C 3.258 3.970 7.551·10 -2 3.292 9.632·10 -1 5.000 2.659·10 -1 4.380 5.292·10-3
  1. Shortest path length between cooperative TF pairs in the regulatory network. The distribution of shortest path lengths between the CTFPs predicted by each method was compared to distributions in the other sets of TF pairs by means of a Mann-Whitney test. Font styles are as in Table 3.
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