Table 4 Genes common to all treatments. Genes selected were expressed in a minimum of 5 of the 6 experiments and compared against all experiments in the database (n = 155). Only genes specific to these experiments were chosen (Fischer's exact Test, p < 0.01). Values are expressed as FC, fold change.
Clone ID | Clone Name | LPS (FC) | AttIHNV (FC) | IHNV (FC) | |||
|---|---|---|---|---|---|---|---|
| Â | Â | 24 hr | 72 hr | 24 hr | 72 hr | 24 hr | 72 hr |
CA384637 | 60 kDa heat shock protein-1 | - | 1.47 | 1.18 | 1.25 | -1.25 | 1.29 |
est03b11 | Acidic leucine-rich nuclear phosphoprotein 32 A-1 | 1.68 | 1.41 | 1.17 | 1.32 | 1.27 | 1.34 |
utu01f04 | Actin, alpha skeletal 2 | - | -1.31 | -1.48 | 1.18 | 1.52 | 1.29 |
utu01g11 | Actin, alpha skeletal 3 | 1.67 | -1.64 | -1.47 | -1.25 | 1.34 | 1.42 |
utu04d04 | Actin, alpha skeletal 4 | 2.00 | -1.30 | -1.18 | - | 1.61 | 1.37 |
EST1-3A_H05 | Adenosine deaminase 3 | 1.57 | - | 1.14 | 2.31 | 3.21 | -6.23 |
HST0001_D04 | Alpha-globin I-2 | -1.30 | - | 10.93 | -2.37 | -3.11 | 15.48 |
CA364941 | Annexin A1-1 | -2.08 | -1.78 | -1.36 | -1.46 | -1.26 | 1.68 |
F_122 | ARP2/3 complex 21 kDa subunit | - | -.192 | -1.41 | -1.23 | -1.57 | 1.33 |
P_10 | Aryl hydrocarbon receptor | 1.35 | - | 1.32 | 1.80 | 1.47 | -2.32 |
CA367764 | Calmodulin-1 | - | -2.13 | -1.26 | -1.29 | -1.73 | 1.49 |
CA348284 | CCAAT/enhancer binding protein beta | -7.36 | -3.22 | -3.05 | - | -2.16 | 1.76 |
CA363762 | Cell death activator CIDE-B | 1.32 | - | 1.35 | 1.74 | 2.08 | -2.53 |
CA383564 | Coatomer epsilon subunit 1 | 2.25 | - | 1.20 | 1.43 | 1.24 | 1.53 |
HK0003_G01 | Creatine kinase, M-2 | - | 1.61 | -2.02 | 1.32 | -1.54 | -1.40 |
HK0002_G02 | Creatine kinase, sarcomeric mitochondrial precursor | -1.68 | - | 4.49 | -1.54 | -1.82 | 1.20 |
CA358998 | Cysteine-rich protein 1 | -1.75 | -2.71 | -1.37 | -1.51 | -1.62 | 2.75 |
utu01g04 | Cytochrome oxidase subunit III-2 | - | -1.36 | -2.55 | -2.04 | -2.08 | 2.33 |
EXOB1_C10 | Cytochrome P450 2K4-2 | 1.60 | 1.34 | 1.20 | -1.44 | - | -1.14 |
utu01d06 | Deoxyribonuclease gamma precursor | 1.50 | - | -1.19 | -1.26 | 1.46 | -1.31 |
utu01e09 | Embryonic alpha-type globin2+collagen alpha 2(1) | -1.62 | 1.42 | 4.94 | -1.41 | -1.96 | - |
HK0001_D12 | Estrogen-responsive B box protein | 1.29 | - | -1.22 | -1.14 | 2.11 | -1.38 |
HK0002_G04 | Fructose-bisphosphate aldolase A | 1.65 | - | 1.25 | 2.45 | 3.59 | -4.80 |
HK0001_A11 | Fumarate hydratase, mitochondrial precursor | - | -1.58 | -1.12 | -1.21 | 1.43 | -1.25 |
CA371363 | Glucose-6-phosphate isomerase-1 | -4.35 | -1.68 | -1.40 | -1.15 | -1.37 | 2.81 |
EXOB3_H05 | Glucose-6-phosphate isomerase-2 | -2.07 | - | -1.51 | -2.08 | -1.77 | 1.81 |
CA366403 | Heat shock 27 kDa protein-1 | 1.44 | - | 1.21 | 1.61 | 2.49 | -2.43 |
HST0001_C04 | Hemoglobin alpha chain | -2.42 | - | 11.19 | -1.82 | -2.93 | 2.87 |
EXOB2_B10 | Hemoglobin beta chain | -1.86 | - | 19.46 | -2.07 | -2.45 | 9.58 |
EXOB4_C11 | High affinity immunoglobulin gamma Fc receptor I precursor | - | 2.15 | -1.70 | -1.73 | -1.88 | 1.71 |
est02a11 | Ig kappa chain V-IV region B17-2 | 2.71 | - | 3.19 | -2.07 | -4.84 | 10.06 |
est02g07 | Ig mu heavy chain disease protein | 2.73 | - | 2.38 | 1.56 | -2.14 | 5.44 |
EXOB2_D05 | Matrix metalloproteinase 9-2 | -6.63 | -2.62 | -3.07 | 1.71 | -1.93 | 3.20 |
EXOB3_H01 | Matrix metalloproteinase-13 | -17.18 | -5.88 | -1.32 | 2.06 | 1.44 | 4.34 |
est03c04 | Matrix metalloproteinase-9 | -7.44 | -2.21 | -2.70 | 1.68 | -2.92 | 5.91 |
EXOB3_F09 | MHC class I heavy chain-1 | - | 1.71 | -1.43 | -1.20 | -2.87 | -3.02 |
P_4 | Myeloperoxidase | 1.55 | - | 1.23 | 1.88 | 2.32 | -3.19 |
EXOB3_E09 | N-myc downstream regulated protein-2 | -1.48 | 1.67 | 1.16 | 1.21 | - | -1.32 |
EXOB2_G02 | Profilin-1 | - | -2.04 | -1.79 | -2.13 | -2.12 | 4.00 |
est02f08 | Serine protease-like protein-1 | -2.97 | -4.64 | -3.21 | 1.32 | -1.84 | 6.41 |
EST1-3A_A09 | Serine protease-like protein-2 | -3.96 | -5.52 | -3.25 | 1.32 | -2.91 | 3.75 |
HK0002_H08 | TATA-binding protein associated factor 2N | 1.79 | - | -1.32 | -1.22 | 1.71 | -1.32 |
est01e02 | Thymosin beta-4-1 | - | -2.73 | -2.03 | -1.32 | -1.47 | 5.17 |
est01e10 | Tolloid-like protein (nephrosin)-1 | -6.69 | -12.97 | -2.60 | -1.07 | -3.11 | 2.98 |
EXOB2_G12 | Tolloid-like protein (nephrosin)-2 | -9.26 | -13.47 | -1.67 | 1.44 | -1.75 | 3.70 |
Hete0002_E09 | Transposase-56 | 2.06 | 1.96 | 1.42 | 1.30 | 2.04 | 1.67 |
EST1-3A_F12 | Transposase-59 | 2.12 | 1.62 | 1.28 | 1.23 | - | 1.20 |
EXOB3_F11 | Ubiquitin-conjugating enzyme E2-18 kDa | - | 1.47 | 1.48 | 1.68 | 1.61 | -1.84 |