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Table 5 Genes specific to viral treatments. Genes selected were expressed in a minimum of 3 of the 4 experiments and compared against all experiments in the database (n = 155). Only genes specific to these experiments were chosen (Fischer's exact Test, p < 0.001). Values are expressed as FC, fold change. 13 Unknowns were removed.

From: Comparative analysis of the acute response of the trout, O. mykiss, head kidney to in vivo challenge with virulent and attenuated infectious hematopoietic necrosis virus and LPS-induced inflammation

Clone ID

Clone Name

AttIHNV (FC)

IHNV (FC)

  

24 hr

72 hr

24 hr

72 hr

CA387866

Arachidonate 5-lipoxygenase-2

1.16

1.34

1.27

1.03

CA384555

B-cell-specific coactivator OBF-1

1.48

1.76

1.37

-1.09

CA343473

C3a anaphylatoxin chemotactic receptor

3.00

2.98

5.35

-1.50

ENH2_F03

Cathepsin K-1

-2.30

1.22

-3.01

1.42

EXOB4_F03

Cathepsin S

-1.46

-1.28

-1.65

2.80

CA376117

CD231

1.31

1.55

2.04

-1.66

CA363762

Cell death activator CIDE-B

1.35

1.74

2.08

-2.53

EXOB4_E08

Cytochrome c oxidase subunit VIIa-related

1.08

-1.14

1.18

-2.47

CA381440

Double-stranded RNA-specific adenosine deaminase

1.45

1.53

1.69

-1.67

CA351392

Guanine nucleotide exchange factor DBS

1.19

1.93

2.97

-3.13

EXOB4_C11

High affinity immunoglobulin gamma Fc receptor I precursor

-1.70

-1.73

-1.88

1.71

HKT0001_A11

Hypothetical-fish 11

1.20

2.28

1.49

-1.85

est03c07

Ig kappa chain V-I region WEA

1.60

2.07

1.41

1.21

est02g07

Ig mu heavy chain disease protein

2.38

1.56

-2.14

5.44

CA363978

Inhibitor of kappaB kinase gamma

1.16

2.13

2.21

-2.36

EXOB3_F09

MHC class I heavy chain-1

-1.43

-1.20

-2.87

-3.02

CA341859

Nuclear factor NF-kappa-B

1.40

1.12

1.63

1.28

CA378435

Protein phosphatase 2C delta isofor

1.44

2.05

3.35

-3.87

EXOB1_B07

PRPF39 protein

1.19

1.22

1.39

 

est03e10

Putative inorganic polyphosphate/ATP-NAD kinase

-1.11

-1.05

1.33

1.29

est03b12

Secretory granule proteoglycan core protein

-1.83

-1.83

-2.97

2.77

ENH2_B08

Splicing factor, arginine/serine-rich 8

1.10

1.24

1.25

-1.49

CA380121

Telomerase reverse transcriptase

1.33

1.36

1.34

-1.33

EXOB1_G12

Thioredoxin

-1.24

-1.61

-1.56

1.46

CA342204

TNF receptor associated factor

1.23

2.33

2.64

-2.89

CA378736

Tyrosine-protein kinase BTK

1.28

1.61

1.81

-1.80

EXOB3_G04

Tyrosine-protein kinase HCK

-1.07

-1.38

-1.39

1.40

P_54

VEGF4

1.23

1.34

1.37

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