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Table 1 Overall summary of differentially expressed genes

From: Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling

  p(t-test) < 0.01 p(t-test) < 0.05 p(t-test) < 0.05, FCb>2
Treatment genes max. FDRa genes max. FDRa genes, total up down mixed
1 h 327 0.589 1350 0.719 130 98 32 -
4 h 524 0.307 2019 0.402 532 407 125 -
8 h 1476 0.068 4576 0.110 1805 1246 559 -
24 h 854 0.173 3124 0.238 1154 658 496 -
In at least 1 time point 2830 - 8471 - 2881 1854 1007 20
  p(ANOVA) < 0.01 p(ANOVA) < 0.05 p(ANOVA) < 0.05, FCc>2
Treatment genes max. FDRa genes max. FDRa genes
All 1756 0.084 4093 0.169 3111d
  1. a the highest expected false discovery rate (FDR); i.e. the maximal q-value observed for the given p(t-test) cut-point
  2. b fold-change between treatment and control
  3. c maximum fold change between treatments [max (treatment/control)/min (treatment/control)]
  4. d of these 3111 genes only 1686 genes are also among the group of 2881 genes that are differentiallyexpressed in at least one time point with p(t-test) < 0.05 and FCb > 2
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