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Table 1 Overall summary of differentially expressed genes

From: Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling

 

p(t-test) < 0.01

p(t-test) < 0.05

p(t-test) < 0.05, FCb>2

Treatment

genes

max. FDRa

genes

max. FDRa

genes, total

up

down

mixed

1 h

327

0.589

1350

0.719

130

98

32

-

4 h

524

0.307

2019

0.402

532

407

125

-

8 h

1476

0.068

4576

0.110

1805

1246

559

-

24 h

854

0.173

3124

0.238

1154

658

496

-

In at least 1 time point

2830

-

8471

-

2881

1854

1007

20

 

p(ANOVA) < 0.01

p(ANOVA) < 0.05

p(ANOVA) < 0.05, FCc>2

Treatment

genes

max. FDRa

genes

max. FDRa

genes

All

1756

0.084

4093

0.169

3111d

  1. a the highest expected false discovery rate (FDR); i.e. the maximal q-value observed for the given p(t-test) cut-point
  2. b fold-change between treatment and control
  3. c maximum fold change between treatments [max (treatment/control)/min (treatment/control)]
  4. d of these 3111 genes only 1686 genes are also among the group of 2881 genes that are differentiallyexpressed in at least one time point with p(t-test) < 0.05 and FCb > 2