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Table 5 43 Putative extracellular proteins (EX) derived from the 2 out of 3 predictions with significant DBSubloc or/and GTD prediction

From: Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches

Lai Locus Copen Locus Protein annotation SWISS-PROTa PDB Codeb
LA1027 LIC12632 Sphingomyelinase C precursor (Sph1)/hemolysin - 1bix
LA1029 LIC12631 Sphingomyelinase C precursor (Sph2)/hemolysin - 1bix
LA4004 LIC13198 Sphingomyelinase C precursor hemolysin (Sph3)/sph- like - 1bix
LA3540 LIC10657 Sphingomyelinase C precursor; hemolysin - 1bix
LA3050 LIC11040 Hemolytic protein-like protein/hemolysin (sph4) - 1aq0
LA3466 LIC10715 Thermolysin P43133 1hyt
LA3454 LIC10723 Flagellar hook-associated protein(fliD) Q9KWW7 1osp
LA3097 LIC11003 Treponemal membrane protein B precursor-like protein/LipL71 P19649 1l8w
LA1530 LIC12234 LRR containing protein Q9RBS2 1d0b
LA1324 LIC12401 LRR containing protein/cytoplasmic membrane protein - 1ogq
LA1354 LIC12375 LRR containing protein/cytoplasmic membrane protein Q9RBS2 1ogq
LA2452 LIC11504 LRR containing protein/cytoplasmic membrane protein Q9RBS2 1ogq
LA2862 LIC11180 LRR containing protein/cytoplasmic membrane protein Q9RBS2 1ogq
LA2966 LIC11097 LRR containing protein/cytoplasmic membrane protein Q9RBS2 1ogq
LA3324 LIC10831 LRR containing protein/conserved hypothetical protein Q9RBS2 1ogq
LA3321 LIC10830 LRR containing protein/putative lipoprotein Q9RBS2 1ogq
LA3322 LIC10830 LRR containing protein/putative lipoprotein Q9RBS2 1ogq
LA0701 LIC12901 LRR containing protein/molybdate metabolism regulator Q9RBS2 1ogq
LA2377 LIC11568 Peptidase, M23/M37/membrane associated peptidase P24204 1acc
LA0505 LIC13050 Probable glycosyl hydrolase/conserved hypothetical protein - 1f00
LA3725 LIC10502 Probable phenazine biosynthesis family protein/CM protein - 1air
LA3730 LIC10498 Putative lipoprotein P15921 1rmg
LA1368 LIC12364 Putative outer membrane protein/CagA P47460 -
LA1759 LIC12050 Putative outer membrane protein/conserved hypothetical protein Q52657 1czf
LA2443 LIC11507 Putative outer membrane protein/conserved hypothetical protein Q9RBS2 1ogq
LA2447 LIC11505 Putative outer membrane protein/conserved hypothetical protein Q9RBS2 1jl5
LA2450 LIC11505 Putative outer membrane protein/conserved hypothetical protein Q9RBS2 1ogq
LA1915 LIC11990 TPR-repeat-containing proteins/cytoplasmic membrane protein P80544 1qqe
LA0043 LIC10038 TPR-repeat-containing proteins/conserved hypothetical protein Q9KQ40 1qqe
LA2773 LIC11246 Conserved hypothetical protein Q06852 1l8w
LA3233 LIC10902 Conserved hypothetical protein O83497 1qcx
LB001 LIC20001 Conserved hypothetical protein - 1eut
LA1499 LIC12259 Conserved hypothetical protein/cytoplasmic membrane protein P35825 1dab
LA1766 LIC12047 Conserved hypothetical protein/cytoplasmic membrane protein Q07833 1czf
LA3333 LIC10825 Conserved hypothetical protein/cytoplasmic membrane protein Q07833 1acc
LA2208 LIC11720 Conserved hypothetical protein/hypothetical protein - 1e15
LA3276c LIC10868 Conserved hypothetical protein/hypothetical protein P15345 1dab
LA0022 LIC10021 Conserved hypothetical protein/putative lipoprotein - 1dab
LA3210 LIC10920 Conserved hypothetical protein/putative lipoprotein - 1rmg
LA3726 LIC10501 Conserved hypothetical protein/putative lipoprotein Q9PJY2 1acc
LB216 LIC20172 Conserved hypothetical protein/putative lipoprotein - 1wxr
LB225 LIC20176 Conserved hypothetical protein/putative lipoprotein - 1wxr
LA4135d LIC13296 hypothetical protein/putative lipoprotein - 1koe
  1. Note LRR: Leucine rich repeat
  2. a: Swiss-Prot ID derived from DBsubloc database
  3. b: PDB code derived from GTD prediction
  4. c: Pfam: PF06739: SBBP (Seven Beta Blade Propeller domain)
  5. d: pfam07588: DUF1554
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BMC Genomics

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