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Table 1 Clustering of 46 TF in PlantTribes (PT) and Genome Clustering database (GCD) compared to DAFT and DRTF databases.

From: Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants

   Arabidopsis thaliana Oryza sativa
FT NAME IPR DAFT PT GCD DRTF PT GCD
     BC PF    BC PF
EIL IPR006957 6 6 6 6 9 10 10 12
BBR/BPC IPR010409 7 8 10 12 4 4 5 5
S1Fa-like IPR006779 3 3b(3) 3 3 2 2 5 5
BES1 IPR008540 8 6 9 10 6 5 4 5
GIF IPR007726 3 3 2 3 3 3 2 3
TCP IPR005333 23 23b(2) 27b(15) 27 21 21b(2) 25b(14) 26
PLATZ IPR006734 10 9 9 10 16 16 17 19
GeBP IPR007592 21 18 21b(8) 21 15 21b(4) 15b(10) 16
SRS IPR007818 10 10 11 12 5 5 5 5
Whirly (PBF-2-like) IPR013742 2 3 3 1 1 2 3 0
AUX/IAA family IPR003311 29 28 33 34 31 33 41 41
CCAAT-HAP3 IPR003957 11 12 17 37a 12 12 12 29a
CCAAT-HAP2 IPR001289 10 10 18 19 11 9 17 19a
C2C2-DOF IPR003851 36 36 40b(16) 40 30 29 34b(18) 33
C2C2-YABBY IPR006780 5 5 6 6 8 7 6 8
TAZ IPR000197 9 11 5 5 6 8 3 4
TUB/TLP IPR000007 11 11 11 10 14 15 16 14
SBP IPR004333 16 17 26b(10) 24 20 18 20b(13) 21
HSF IPR000232 23 23 22 25 29 29 37 39
AP2/EREBP IPR001471 146 110 113 150 165 108 108 170
NAC IPR003441 107 90 92 119 131 92 85 152
bZIP IPR004827 72 185b(12) 82b(22) 84 84 205b(19) 64b(22) 90
MADS IPR002100 104 71 69 65 64 65 62 44
WRKY IPR003657 72 71 105b(30) 81 98 99 96b(37) 104
GRAS IPR005202 33 32 25 34 55 63 39 57
AS2/LOB IPR004883 42 36 35 45 36 29 21 37
MBF1 IPR001387 3 3 3 3 2 2 2 2
Nin-like IPR003035 14 61a 9 10 13 315a 13b(9) 13b(2)
ZF-HD IPR006456 16 16 13 17 15 15 8 15
CPP IPR005172 8 10 3 9 11 18 3 11
ARF IPR011525 22 25 24 19 26 29 26 22
ZIM IPR010399 18 10 26b(9) 20 18 13 10 19
VOZ IPR009105 2 2 2 1 2 2 2 0
ULT IPR000770 2 2 2 1 2 2 2 0
GARP-G2-like IPR001005 IPR009057 43 73 22 260a 46 80 56b(23) 244a
GARP-ARR-B IPR001789 IPR009057 10 73a 8 14 8 80a 4 9
LUG IPR006594 IPR011046 2 76a 5 227a 6 74a 3 207
CAMTA IPR000048 IPR002110 IPR005559 6 6 4 3 6 8 5 5
ALFIN IPR001965 IPR011011 7 7 7 46a 10 10 10 56
CCAAT-DR1 IPR003958 IPR009072 2 12a 17a 37a 1 12a 12a 29a
CCAAT-HAP5 IPR003958 IPR009072 13 10 15 37a 16 12 17b(8) 29a
NZZ   1 1 1 1 1 1 0 0
GRF   9 9 9b(7) 9b(8) 12 16 12b(8) 12b(11)
HRT-like   2 3 3b(2) 2b(2) 1 1 1 1
MYB3R and R2R3 IPR001005 IPR009057 150 222 118 260 129 221 86 244
  1. a: Cluster containing more than 50% of sequences in comparison with the total sequence family members present in DATF/DRTF; b: Total number of sequences identified in several subgroups (number of subgroups in brackets) for the DATF/DRTF corresponding gene list; PF by PFAM domains; BC by BLASTCLUST. Note that for all groups, the sequence number differences found with DATF/DRTF are mainly due to data source versions used.