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Table 1 Clustering of 46 TF in PlantTribes (PT) and Genome Clustering database (GCD) compared to DAFT and DRTF databases.

From: Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants

  

Arabidopsis thaliana

Oryza sativa

FT NAME

IPR

DAFT

PT

GCD

DRTF

PT

GCD

    

BC

PF

  

BC

PF

EIL

IPR006957

6

6

6

6

9

10

10

12

BBR/BPC

IPR010409

7

8

10

12

4

4

5

5

S1Fa-like

IPR006779

3

3b(3)

3

3

2

2

5

5

BES1

IPR008540

8

6

9

10

6

5

4

5

GIF

IPR007726

3

3

2

3

3

3

2

3

TCP

IPR005333

23

23b(2)

27b(15)

27

21

21b(2)

25b(14)

26

PLATZ

IPR006734

10

9

9

10

16

16

17

19

GeBP

IPR007592

21

18

21b(8)

21

15

21b(4)

15b(10)

16

SRS

IPR007818

10

10

11

12

5

5

5

5

Whirly (PBF-2-like)

IPR013742

2

3

3

1

1

2

3

0

AUX/IAA family

IPR003311

29

28

33

34

31

33

41

41

CCAAT-HAP3

IPR003957

11

12

17

37a

12

12

12

29a

CCAAT-HAP2

IPR001289

10

10

18

19

11

9

17

19a

C2C2-DOF

IPR003851

36

36

40b(16)

40

30

29

34b(18)

33

C2C2-YABBY

IPR006780

5

5

6

6

8

7

6

8

TAZ

IPR000197

9

11

5

5

6

8

3

4

TUB/TLP

IPR000007

11

11

11

10

14

15

16

14

SBP

IPR004333

16

17

26b(10)

24

20

18

20b(13)

21

HSF

IPR000232

23

23

22

25

29

29

37

39

AP2/EREBP

IPR001471

146

110

113

150

165

108

108

170

NAC

IPR003441

107

90

92

119

131

92

85

152

bZIP

IPR004827

72

185b(12)

82b(22)

84

84

205b(19)

64b(22)

90

MADS

IPR002100

104

71

69

65

64

65

62

44

WRKY

IPR003657

72

71

105b(30)

81

98

99

96b(37)

104

GRAS

IPR005202

33

32

25

34

55

63

39

57

AS2/LOB

IPR004883

42

36

35

45

36

29

21

37

MBF1

IPR001387

3

3

3

3

2

2

2

2

Nin-like

IPR003035

14

61a

9

10

13

315a

13b(9)

13b(2)

ZF-HD

IPR006456

16

16

13

17

15

15

8

15

CPP

IPR005172

8

10

3

9

11

18

3

11

ARF

IPR011525

22

25

24

19

26

29

26

22

ZIM

IPR010399

18

10

26b(9)

20

18

13

10

19

VOZ

IPR009105

2

2

2

1

2

2

2

0

ULT

IPR000770

2

2

2

1

2

2

2

0

GARP-G2-like

IPR001005 IPR009057

43

73

22

260a

46

80

56b(23)

244a

GARP-ARR-B

IPR001789 IPR009057

10

73a

8

14

8

80a

4

9

LUG

IPR006594 IPR011046

2

76a

5

227a

6

74a

3

207

CAMTA

IPR000048 IPR002110 IPR005559

6

6

4

3

6

8

5

5

ALFIN

IPR001965 IPR011011

7

7

7

46a

10

10

10

56

CCAAT-DR1

IPR003958 IPR009072

2

12a

17a

37a

1

12a

12a

29a

CCAAT-HAP5

IPR003958 IPR009072

13

10

15

37a

16

12

17b(8)

29a

NZZ

 

1

1

1

1

1

1

0

0

GRF

 

9

9

9b(7)

9b(8)

12

16

12b(8)

12b(11)

HRT-like

 

2

3

3b(2)

2b(2)

1

1

1

1

MYB3R and R2R3

IPR001005 IPR009057

150

222

118

260

129

221

86

244

  1. a: Cluster containing more than 50% of sequences in comparison with the total sequence family members present in DATF/DRTF; b: Total number of sequences identified in several subgroups (number of subgroups in brackets) for the DATF/DRTF corresponding gene list; PF by PFAM domains; BC by BLASTCLUST. Note that for all groups, the sequence number differences found with DATF/DRTF are mainly due to data source versions used.