|
microRNA name
|
Length
|
Sequence
|
# Reads in MDV infected CEF
|
# Reads in uninfected CEF
|
Ratio Infected/Uninfected (Normalized)
|
|---|
|
gga-miR-29b
|
23
|
TAGCACCATTTGAAATCAGTGTT
|
64
|
2
|
18.8
|
|
gga-miR-196
|
21
|
TAGGTAGTTTCATGTTGTTGG
|
23
|
1
|
13.5
|
|
gga-miR-133a
|
22
|
TTGGTCCCCTTCAACCAGCTGT
|
15
|
2
|
4.4
|
|
gga-miR-10b
|
22
|
TACCCTGTAGAACCGAATTTGT
|
70
|
15
|
2.7
|
|
gga-miR-30d
|
22
|
TGTAAACATCCCCGACTGGAAG
|
23
|
6
|
2.3
|
|
gga-let-7f
|
22
|
TGAGGTAGTAGATTGTATAGTT
|
338
|
454
|
0.4
|
|
gga-let-7b
|
22
|
TGAGGTAGTAGGTTGTGTGGTT
|
74
|
105
|
0.4
|
|
gga-miR-130a
|
22
|
CAGTGCAATATTAAAAGGGCAT
|
18
|
28
|
0.4
|
|
gga-let-7a
|
22
|
TGAGGTAGTAGGTTGTATAGTT
|
383
|
603
|
0.4
|
|
gga-miR-1a
|
21
|
TGGAATGTAAAGAAGTATGTA
|
7
|
12
|
0.3
|
- Data shown are microRNAs with more than 15 reads in one library and 2-fold difference in read count, after scaling for total number of reads matching the chicken genome in each library.
