Deep Sequencing of Chicken microRNAs

BMC Genomics

Table 3 Most frequently sequenced microRNAs in CEFs

microRNA name	# Reads in MDV infected CEF	# Reads in uninfected CEF	Ratio Infected/Uninfected (normalized)
gga-miR-222a	10361	4945	1.2
gga-miR-221	6708	4112	1.0
gga-miR-125b	3689	2093	1.0
gga-miR-148a	3583	2062	1.0
gga-miR-21	2929	1488	1.2
gga-miR-103	1297	841	0.9
gga-miR-17-5p	826	564	0.9
gga-miR-20a	666	414	0.9
gga-miR-27b	650	400	1.0
gga-miR-20b	619	378	1.0
gga-miR-199	529	301	1.0
gga-miR-26a	522	334	0.9
gga-miR-218	499	370	0.8

Data shown are microRNAs with more than 15 reads in one library and 2-fold difference in read count, after scaling for total number of reads matching the chicken genome in each library.

ISSN: 1471-2164